Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium6437g00079 | ATGGCTGGCTTAATATCTTGCTTTTCAGGAACTCTAAAATTGTGTACTATTTGTCTTTTTTTTTTCCTTTCGCAGATTGAAAAGCTTAGTGACACACAATGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGGCCTGGTTACAGATTGTTGAATGCAGGAGGGTGCTGAAGTGGACATATGCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAGCTATTCCTAAATGCCGATGGGCCATCCAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTCGAGAATTTGGTGAGGGCATTGGAGAATGGTTTATCTGATGTGGATAGTAATGGGGCTGCTTCGAGCAAAGCAACGAGCTCCAAAAATGCAGCAGGGAGCAGCAAAGGGAGAGGAGGAAGAGGAAAAACAACTATCCGAACTAGCATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAACATTGTACCTATGCAAATGTTAGGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGGCGATGA | 645 | 0.4326 | MAGLISCFSGTLKLCTICLFFFLSQIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKTTIRTSISSRMTDDNHWSCEHCTYANVRSATTCQMCNQQRR | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium6437g00079 | 214 | MobiDBLite | consensus disorder prediction | 146 | 182 | - | - | |
| Vium6437g00079 | 214 | ProSitePatterns | Zinc finger RanBP2-type signature. | 190 | 209 | IPR001876 | - | |
| Vium6437g00079 | 214 | SMART | zf_4 | 188 | 212 | IPR001876 | - | |
| Vium6437g00079 | 214 | Gene3D | - | 184 | 214 | - | - | |
| Vium6437g00079 | 214 | Gene3D | - | 22 | 145 | - | - | |
| Vium6437g00079 | 214 | SUPERFAMILY | Ran binding protein zinc finger-like | 186 | 213 | IPR036443 | - | |
| Vium6437g00079 | 214 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 186 | 214 | IPR001876 | - | |
| Vium6437g00079 | 214 | MobiDBLite | consensus disorder prediction | 146 | 164 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium6437g00079 | Vium-Chr6437 | 337954 | 339693 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium6437g00079 | 24 | 213 | ARIADNE family | AT1G65430 | 67.368 | 1.32e-83 | 257 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium6437g00079 | K11968 | - | vum:124843329 | 396.741 |