Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00057 ATGAACCTATGGCCAGTTCCATTTGTTACTATATTTGAGGTTGTGGTTTTCTCATGCTTGTGGTTGCAAGTTTCAAGTCTTGGCTCCATGTCTTCCATTGCCGTCTCTTACGGCGACAAAGGGTCCGCGTTTTGTGGCTTGAAATCGGATGGATCTCACACTGTAAACTGTTACGGGATGAACTCAGCCATAATTTATGGAACACCAACACATTTTCCGTTCTTTGGTCTGACAGCCGGTGATGGGTTTGTGTGCGGGCTTTTGATGAGTTCTAGTCAACCATATTGCTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAACCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCCGGGGATTTTCACGTTTGTGGATTGAGGAAACCATTGACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACAAATAACTATGTGTTTGATGGGCAGGTTCAAGCAATCTCAGCTGGCTCTCAGTTCAATTGTGGCTTGTTTTCTCAGAACAGAAGTGTGTTCTGCTGGGGGGACGAGACAAGTAGCCAAGTTATTAATATGGTCCCTAAGGGCTTGAGGTTTCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTGGAAGGGGTGAATTCTAGAGCAGTTTGTTGGGGGAGGAGCTTGCTGGATTTGGGTGAAGAACTTTCAATTTCATTGACAGGTTCAGGACATGGACAAGGTAAAGTTGAATTGGCTCCCAATGATCCCATGCTTTCAGTGGTGGGAGGGAAGTTCCATGCATGTGGGATTAAGAGCTATGATCATGGAGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGCACCAGAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTACTTTACCTGTGGAGTTCTTGTTGAGAAATCTCATATGCCTGTGTGTTGGGGTGTTGGCTTCCCCACTTCTCTCCCTTTGCCTGTCTCACCAAGAATGTGTAGGTCTACTCCATGTCCTCCAGGTTACTTTGAAACGTCACAAAATGGTATATGCAAGTCACCAGATTCCCATGTTTGCATGCCATGCAGTGCTTCTTGTCCTCCTGAGATGTACAAGAGAAGTGGATGCAATTTGAAATCTGACATACTATGTGAATATAACTGTTCTATCTGTTCCTCGCCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTCTGGCAAGAGAAGTGAAAGATTTTGGTCACTTCAACTGCCCGTGATTATTGCAGAGATAGCTTTTGCTGTTTTCTTTGTTTGTATTGTGTCCATAACTGCGGTGTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCTTCTACAGCAAGAGGGTCAAAGGGGAAGAAACTAAGAGGGAGTTCGTCACACCAGAAGGAGAAATCCAAGGTCCGACCAGACTTGGAGGAGTTCAAGATTAGGAGAGCACAGATGTTCCCGTACGAGGAACTTGAAAGAGCAACCGGTGGATTCAAAGAGGAGTCCATAGTGGGGAAGGGAAGTTTCTCTTGTGTGTTCAAAGGGGTTCTCAAAGATGGCACTGTTGTTGCTGTTAAAAGGGCCATAGTGTATCCCAACGTGCAGAAGAACTCCAAGGAGTTTCACACCGAGCTTGACTTGCTTTCTAGGCTGAACCACGCACACTTGCTCAATCTACTAGGCTACTGTGAGGAGGGTGGAGAGAGACTCCTTGTCTATGAGTACATGGCTCATGGCTCATTGCATCAACACCTTCATGGCAACAAAGTGATGAAAGAGCAAATGGATTGGGTGAGAAGGGTGACGATTGCAGTGCAAGCAGCTCGTGGAATCGAATATCTGCACGGCTATGCTTGTCCACCGGTGATTCACAGAGACATAAAGTCCTCAAACATTCTCATCGATGAAGAACACAATGCGAGAGTGGCTGATTTTGGTTTGTCCCTGCTTGGTCCTGCAGATAGCAGCTCCCCACTGGCTGAACTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTACAGGCTCCATTACCTCACCACAAAGTCTGATGTATACAGCTTTGGCGTTCTACTGTTGGAGATACTGAGCGGGAGAAAAGCTATTGACATGCAGTATGAAGAAGGGAACATTGTTCAATGGGCAGTGCCTCTGATAAAGTCAGGAGATATAGGTTCAATTCTGGATCCAGTTTTGAAAGCTCCTTCTGATGTTGATGCATTGAGAAGAATAGCTAATGTGGCTTGTAAAAGTGTGAGGATGAAAGGGAAGGATAGGCCTTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCTCTTGCACAGTTGATGGGGAGTCCTTGCATTGAGCAGCCAATTTTGCCAACTGAGGTGGTTTTGGGAAGCAACAGACTGCACAAAAAATCATCTCAAAGGTCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAAGATCAGAGGTTTGAGTTCAGAGCACCCTCATGGATCACTTTCCCCAGTGTCACTTCTTCTCAGAGAAGATCAGGCTCGGAGGCTGATGTTGAGGGAAAAAATGTAGAAGGAAGGAATTTGGGCAATGTCGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGCTCTCAAAAGTCTTGAGGAAGAGATTGGTCTTGCTTCTCCACGAGAGAAACTCTTCTTGCAACACAACTTCTGA 2742 0.4621 MNLWPVPFVTIFEVVVFSCLWLQVSSLGSMSSIAVSYGDKGSAFCGLKSDGSHTVNCYGMNSAIIYGTPTHFPFFGLTAGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDFHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQAISAGSQFNCGLFSQNRSVFCWGDETSSQVINMVPKGLRFQKISAGGYHVCGILEGVNSRAVCWGRSLLDLGEELSISLTGSGHGQGKVELAPNDPMLSVVGGKFHACGIKSYDHGVVCWGYSFKAGTRVPSGIKAFEIGAGNYFTCGVLVEKSHMPVCWGVGFPTSLPLPVSPRMCRSTPCPPGYFETSQNGICKSPDSHVCMPCSASCPPEMYKRSGCNLKSDILCEYNCSICSSPECLSNCSSSYSNAASGKRSERFWSLQLPVIIAEIAFAVFFVCIVSITAVLYVRYKLRDCQCSSTARGSKGKKLRGSSSHQKEKSKVRPDLEEFKIRRAQMFPYEELERATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVYPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMKEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIGSILDPVLKAPSDVDALRRIANVACKSVRMKGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADVEGKNVEGRNLGNVGGGGGGGGGGGDALKSLEEEIGLASPREKLFLQHNF 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00057 913 SMART serkin_6 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6437g00057 913 SUPERFAMILY Protein kinase-like (PK-like) 493 785 IPR011009 -
Vium6437g00057 913 Gene3D - 77 343 IPR009091 -
Vium6437g00057 913 FunFam Serine/threonine-protein kinase-like protein CR4 26 193 - -
Vium6437g00057 913 Gene3D Phosphorylase Kinase; domain 1 483 590 - -
Vium6437g00057 913 MobiDBLite consensus disorder prediction 851 897 - -
Vium6437g00057 913 Pfam Protein kinase domain 513 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6437g00057 913 SUPERFAMILY RCC1/BLIP-II 26 229 IPR009091 -
Vium6437g00057 913 MobiDBLite consensus disorder prediction 463 487 - -
Vium6437g00057 913 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Vium6437g00057 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vium6437g00057 913 FunFam serine/threonine-protein kinase-like protein CCR1 483 590 - -
Vium6437g00057 913 MobiDBLite consensus disorder prediction 814 835 - -
Vium6437g00057 913 Gene3D Transferase(Phosphotransferase) domain 1 591 795 - -
Vium6437g00057 913 FunFam Receptor protein kinase CRINKLY4 591 792 - -
Vium6437g00057 913 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6437g00057 913 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 14 913 - -
Vium6437g00057 913 SUPERFAMILY RCC1/BLIP-II 246 338 IPR009091 -
Vium6437g00057 913 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 343 390 IPR001368 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00057 Vium-Chr6437 263099 266691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00057 8 913 Receptor kinase-like Gene Family AT3G59420 66.340 0.0 1220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium6437g00057 Pkinase 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00057 - - gmx:100807392 1663.66