Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00051 ATGAAAATTCAGTGTGATGTGTGTGAGAGGGCTCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAACTTGCAAGCAAGCACCAAAGGCTTCTCCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCAATTCATTCAGCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCTACTGGTATCAGAGTGGCCTCGAGTTCTAGTTGCACCAAAGACAATGAAAAGAGTCACTTGGAGCCTCCCAATAGGAATGCACAACAAGTTTCCACCAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTTTTGGAGTTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTTGGTGAACAATTTACTCAGGAAGCATTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACTAATAATAGCAGCAGTGTTGCCTCATTCAGAACCTCCAAGTCCTACATGTCACACAAAAAACCTAGGATTGAAGTCCTAAATGATGATGATGATGAGGAGTACTTTACTGTGCCTGATCTTGGCTAG 723 0.4426 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSSCTKDNEKSHLEPPNRNAQQVSTKVPSQQVPSFTSSWAVDDFLELTGFESPEKKESLQFGELEWLTDVGIFGEQFTQEALAAAEVPQLPVTNNSSSVASFRTSKSYMSHKKPRIEVLNDDDDEEYFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00051 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium6437g00051 240 CDD Bbox1_BBX-like 5 47 - -
Vium6437g00051 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vium6437g00051 240 MobiDBLite consensus disorder prediction 111 131 - -
Vium6437g00051 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vium6437g00051 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Vium6437g00051 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Vium6437g00051 240 CDD Bbox1_BBX-like 57 98 - -
Vium6437g00051 240 Gene3D Classic Zinc Finger 1 95 - -
Vium6437g00051 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vium6437g00051 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00051 Vium-Chr6437 240204 242591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00051 1 161 Orphan Transcription Factor Family AT1G06040 62.353 2.58e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium6437g00051 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00051 - - vun:114183169 480.33