Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00042 ATGGATAAGGACAAATCTCTAGGTCACGGTGGAGGTTTGCCACCTCCCTCGGCACGTTATTCGGGTTACTCACCTTCCGGAACTGCGTTCAGTGTGAAATCTGAGCCGCCGTCGTCGTCGACGTCGTCGTATCTGCCACTGGCTCCGGGAATTTCCACACCGGAGTCTAGTGGGTTTAGTCATGATATTAGCAGAATGCCCGATAATCCTCCGAGAAATAGAGGTCACAGGCGTGCTCATTCCGAGATTCTTACCCTTCCGGATGATATTAGCTTTGACAGTGACCTTGGTGTGGTTGGAGGTGCCGATGGGCCTTCCTTCTCCGACGAAGCCGAGGAGGACTTGTTGTCTATGTACCTTGATATGGATAAGTTCAATTCGTCGTCGGCGACGTCCACGTTTCAAATGGGCGAACCGTCTGGTGCAGTGGGAGCGTCGGGTTCGGCATCGGCATCGGCATCGGGGGCACCCACCTCTTCTGCAGAGAATAGTGCTGTTGGAACTCTTGAACGGCCCAGAGTTAGACACCAGCATAGTCAATCCATGGATGGATCAACTACCATCAAGCCTGAGCTGCTGGTTTCTGGTTCGGAAGACTTGTCTGCGGCGGATTCCAAAAAAGCAATGTCAGCTGCTAAGCTTGCTGAGCTTGCCTTGATTGACCCCAAACGTGCGAAAAGGATATGGGCAAATAGACAGTCTGCTGCGAGATCAAAAGAGAGGAAGATGCGGTACATTGCTGAGCTTGAAAGGAAGGTACAAACGTTGCAAACGGAAGCAACATCTTTGTCTGCACAATTAAGTCTCTTGCAGAGGGATACAAATGGCTTGAATTCTGAGAACAGTGAACTGAAGCTGCGGTTACAAACCATGGAGCAACAAGTTCACTTGCAAGATGCACTAAATGACGCATTAAAAGAGGAAATTCAGCATTTGAAAATACTGACTGGACAAGCTATACCACCTAATGGAGGAGGACCTATGCTGAACTTTGCCTCTTTTGGAGGGGGGCAGCAATTCTATCCCAATAATCATGCCATGCACACCCTTTTAGCTGCACAGCAGTTTCAACAACTCCAAATTCATCCTCAGAAGCAGCATCAATTTCAGCAGCTTCAACAACAAATGTTGCAACAGCAGCAGCAACAACAACAGAGGGAACAGCAGCACCAACAATCAAGCGACATGAAAATGAGAGAAGCTTCACCTACGCCATGTCATCCCAAAGATAATGCGTTGTCAGATGTAAATCCTTCAGGAGCTAAGGACTGTTGA 1275 0.4863 MDKDKSLGHGGGLPPPSARYSGYSPSGTAFSVKSEPPSSSTSSYLPLAPGISTPESSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDEAEEDLLSMYLDMDKFNSSSATSTFQMGEPSGAVGASGSASASASGAPTSSAENSAVGTLERPRVRHQHSQSMDGSTTIKPELLVSGSEDLSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLSLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAIPPNGGGPMLNFASFGGGQQFYPNNHAMHTLLAAQQFQQLQIHPQKQHQFQQLQQQMLQQQQQQQQREQQHQQSSDMKMREASPTPCHPKDNALSDVNPSGAKDC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00042 424 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 33 395 - -
Vium6437g00042 424 MobiDBLite consensus disorder prediction 1 86 - -
Vium6437g00042 424 FunFam probable transcription factor PosF21 222 275 - -
Vium6437g00042 424 Coils Coil 239 308 - -
Vium6437g00042 424 Gene3D - 222 275 - -
Vium6437g00042 424 MobiDBLite consensus disorder prediction 67 84 - -
Vium6437g00042 424 MobiDBLite consensus disorder prediction 379 424 - -
Vium6437g00042 424 CDD bZIP_plant_RF2 224 273 IPR044759 GO:0003700|GO:0006355
Vium6437g00042 424 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Vium6437g00042 424 SUPERFAMILY Leucine zipper domain 223 274 IPR046347 GO:0003700|GO:0006355
Vium6437g00042 424 MobiDBLite consensus disorder prediction 379 399 - -
Vium6437g00042 424 MobiDBLite consensus disorder prediction 129 188 - -
Vium6437g00042 424 MobiDBLite consensus disorder prediction 21 63 - -
Vium6437g00042 424 Coils Coil 369 389 - -
Vium6437g00042 424 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 284 IPR004827 GO:0003700|GO:0006355
Vium6437g00042 424 Pfam bZIP transcription factor 223 281 IPR004827 GO:0003700|GO:0006355
Vium6437g00042 424 MobiDBLite consensus disorder prediction 129 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00042 Vium-Chr6437 198820 202290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00042 19 353 bZIP Transcription Factor Family AT1G06070 72.321 4.08e-169 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6437g00042 bZIP_1 2.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00042 - - gmx:100786738 579.326