Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium6437g00040 | ATGGCGCCTCCTACAAAATCCGTGGAAAGCGAGGAGTGGGGAACTCCAACAAACAACCTATGGGTTGGAAATCTGCCGCCGGATGTCGCCGATTCCGATCTCATGGAACTATTCGCTCCGTACGGTTCTCTCGACGCACTCATTTCCTATTCCCCACGCACCTTCGCTTTCGTTTTGTTCGGACGCGTTGAAGAGGCCAAGGCGGCGAAAACAAATTTACAAGGCGCGTCGCTGCGCGGCTTTCAAATCAGAATCGAATTTGCAATACCGGCAAGACCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCACAACGTAGCGATGGAGGATTTGGAAGCGGAGTTTCGTAAATTCGGTAAGATTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTCTCAATTTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGTAGCCATATTTGTGTGGACTTCCTTAGGTCACAATCTATGAATAGGGATTTTATGGTTGACCAAGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATGGGGAGGAATAGTCCACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCGTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCGTTTGTTGAGTTTAGAAGCATTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAGGGACGGCTTTTTAATGATCCTAGAATAACGATTATGTATTCAAGCAGTGATACAACACCTGGCAAAGATTACCCTGGATTTTACCCTGGAAGTAAAGGGCCTTTACCCGATGGATTAATGAACGAGCTTCCATTTCGACCTCCACAATCGGATGTATTTGGTCAAAATCGTCCTATTGTTCCAAATAATTTTCCAGGGCAATTGCCACCTGGTGGTATAAGTGGACCTACTGTCTCAATGCGACCTTTTGTTCCCCAAGGTCTTGATCCTCTTAGCAATGGTCCTGATTTTAATGAGATGAGCACACTTCACAAATTTCAAGATGGTAGCTCGAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCAGCTCCGGTCCATGGGATGTACTTGATACAAACCAATTTTCAAGAGATTCTAAACGATCAAGGATAGATGATGCTTTGCTAATTGGTGATGCTTCATTTCCTTTAAGAAATAATGATGACCGCGGATTAAGATTAGAACAACCATTTGCAATCGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGGGTCACCTTGGTCCAGTTGGCACTAGGATCACTTCTGGAGTTCCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAGTTATTGCGAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGAACTGGATTGGATATGTTAACGAAACACTATACTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTCCTTCATACACCGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTATTGATAATACCACCTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACGGGACCTGAACGATTATACGGTGTGGTTCTTAAGTTTCCACCAGTTCCAAGTAGCACATCTATGCAACAATCAATGCATTTTCCTTCGCCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCAGAGTATGGTTCAATCTCTGTAAAGGAGCAACCAATTTTACCAACGGAATATAATAGATTGTTGCACGATGATTCTAAGCATCTGCCAAAACCACTTCATCTTGCGACCAGTGTCACTCCTCCAGTTCATTCTGTTCCTCCTGGTTATTCTTCTACTTATACAGCTTCTGCATCCCAAGCGGGAGTTACATTGACCCCTGAACTTATTGCAACTTTAACTTCGTTTCTCCCTTCAACTATACAATCATCAACAGCTGGTGGCACAATGACAGTGGTTGGTCCCTCTACTATGAAGCCACCTTTTCCATCTGTTGCATCTATTGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTACGGATCCCCCTAGTTATCGTCCTCAACCGTTTGGGAGTATTAATAATGCTCAATATCATCCTTATCCACCTGCATCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTGCACATTTCCATGATACGGCTTCAAGTCTTCAGCAGCTAGGTGCTTTTTCGTCATCTACATCCTTGACTAATTTCATTATACCTCCTCAAAATGGACAGGAAGCTGTTCCCGCTCAACTCAGTCAACAGTATCAGGTGGAAGTGCCCCACAGCAATGAGAAAGGATATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCTAAGGCATTCCAACAACCTAATAATCTTATTCCTTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTGGCCAGGGAATCTCTGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAAATACAGCAACAGCAAACCCAAGGAGAGCATGGACCTGGAAATCAACAATAA | 2835 | 0.4416 | MAPPTKSVESEEWGTPTNNLWVGNLPPDVADSDLMELFAPYGSLDALISYSPRTFAFVLFGRVEEAKAAKTNLQGASLRGFQIRIEFAIPARPCKQLWVGGVSHNVAMEDLEAEFRKFGKIEDFKFFRDRRTACVEFLNLDDATRAMKVMNGKRLGGSHICVDFLRSQSMNRDFMVDQGQFQARPQHLQPSMGRNSPPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDTTPGKDYPGFYPGSKGPLPDGLMNELPFRPPQSDVFGQNRPIVPNNFPGQLPPGGISGPTVSMRPFVPQGLDPLSNGPDFNEMSTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPSSGPWDVLDTNQFSRDSKRSRIDDALLIGDASFPLRNNDDRGLRLEQPFAIDPIIDGGGSGPKGHLGPVGTRITSGVPGSVQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYTDAIGFEIVFFLPDSEEDFPSYTEFLRYLKAKNRAGVAKFIDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSSTSMQQSMHFPSPSTQYVQQIPPSQPEYGSISVKEQPILPTEYNRLLHDDSKHLPKPLHLATSVTPPVHSVPPGYSSTYTASASQAGVTLTPELIATLTSFLPSTIQSSTAGGTMTVVGPSTMKPPFPSVASIDGNQSHLWKQDQQTTDPPSYRPQPFGSINNAQYHPYPPASSTGHPAQVVSGSAHFHDTASSLQQLGAFSSSTSLTNFIIPPQNGQEAVPAQLSQQYQVEVPHSNEKGYGVVQGTDPSVLYSSKAFQQPNNLIPSSNQVSNAASQQHMNSEPPNQQLQPAGQGISELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ | 944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium6437g00040 | 944 | Gene3D | - | 2 | 93 | IPR012677 | - | |
| Vium6437g00040 | 944 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 200 | 273 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | CDD | RRM_SF | 97 | 163 | - | - | |
| Vium6437g00040 | 944 | Gene3D | - | 94 | 192 | IPR012677 | - | |
| Vium6437g00040 | 944 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 95 | 167 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | SUPERFAMILY | RNA-binding domain, RBD | 185 | 275 | IPR035979 | GO:0003676 | |
| Vium6437g00040 | 944 | FunFam | Flowering time control protein FPA | 10 | 92 | - | - | |
| Vium6437g00040 | 944 | FunFam | flowering time control protein FPA | 194 | 286 | - | - | |
| Vium6437g00040 | 944 | MobiDBLite | consensus disorder prediction | 364 | 405 | - | - | |
| Vium6437g00040 | 944 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 97 | 159 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 84 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 211 | 266 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | SUPERFAMILY | RNA-binding domain, RBD | 16 | 170 | IPR035979 | GO:0003676 | |
| Vium6437g00040 | 944 | SMART | rrm1_1 | 96 | 163 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | SMART | rrm1_1 | 19 | 86 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | SMART | rrm1_1 | 201 | 269 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 16 | 88 | - | - | |
| Vium6437g00040 | 944 | Gene3D | - | 193 | 279 | IPR012677 | - | |
| Vium6437g00040 | 944 | CDD | RRM_SF | 20 | 86 | - | - | |
| Vium6437g00040 | 944 | MobiDBLite | consensus disorder prediction | 870 | 900 | - | - | |
| Vium6437g00040 | 944 | FunFam | Flowering time control protein FPA isoform A | 93 | 193 | - | - | |
| Vium6437g00040 | 944 | CDD | SPOC_FPA-like | 482 | 602 | - | - | |
| Vium6437g00040 | 944 | MobiDBLite | consensus disorder prediction | 739 | 770 | - | - | |
| Vium6437g00040 | 944 | MobiDBLite | consensus disorder prediction | 738 | 770 | - | - | |
| Vium6437g00040 | 944 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 90 | IPR000504 | GO:0003723 | |
| Vium6437g00040 | 944 | Pfam | SPOC domain | 477 | 594 | IPR012921 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium6437g00040 | Vium-Chr6437 | 187780 | 195333 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium6437g00040 | 97 | 268 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.962 | 3.52e-08 | 55.5 |