Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00035 ATGCCGAAGCAGATTCATGAGATTAAAGACTTCCTCCTCACTGCGAGGAGGAAGGATGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTGGTAAAGTTCAAGGTTCGCTGCTCCAAGTACCTGTACACCCTCTGTGTGTTTGACTCTGAGAAGGCTGATAAGTTGAAGCAATCACTTCCTCCATGTTTGAGTGTGCAAGATGTGTGA 210 0.4619 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPCLSVQDV 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00035 69 Pfam Ribosomal L38e protein family 2 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vium6437g00035 69 Gene3D - 1 69 IPR038464 -
Vium6437g00035 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vium6437g00035 69 FunFam 60S ribosomal protein L38 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00035 Vium-Chr6437 159549 160951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00035 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 92.754 1.78e-42 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00035 K02923 - gmx:100806030 135.961