Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00034 ATGCACTTAAGTCCTTACACTACAACTCCAAAGAAGCCATCACCACACTCCGACAGCCACCACCACCACAACAACCACCACCACCACCACCATAGCAACAACATTGTTGATGAAGCTGCAGCGTTAGATAACAACAACATGCATCGGAGCAACCAGAGCCACACATCCACAAGTCGTTCTTCGGACTCCAGTGAGCCGAATGAAGATGGCAAATGGGCACCTAAGCTTCTGAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCGACGAAAACGCACCATCTTTTGTGGATGCTTAACGAGCTTGCTTCGCCCTACGGTGACTGCGATCAAAAGCTCGCGTCTTACTTCTTGCAAGCCTTGTTCTGCAGAGCCACCGAGTCCGGCGAGAGATGCTACAAGACGCTCTCCTCCGTGGCGGAGAAGAACCACTCGTTCGATTCCGCGAGGAGGTTGATTCTCAAGTTTCAAGAGGTGAGCCCTTGGACCACGTTCGGACACGTGGCCTCCAACGGGGCCATCTTGGAGGCCTTGGAGGGAGAGCCCAAACTCCACATCATCGATCTCAGCAACACGCTTTGCACGCAGTGGCCTACTTTGTTGGAGGCTTTGGCCACGCGAAACGACGAAACGCCGCACCTGAAACTCACCGTGGTGGCGCTTGCGGGGTCGGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCGAGGCTCATGGGCGTGCCCTTTGAATTCAACGTGATCAGTGGCCTGAGGGATCTCACAAAAGAAGGCCTGGGCGTTCAGGAGGACGAAGCCATCGCCGTGAACTGCGTCGGGGCGTTGAGAAGAGTGGAGGTCGAAGAGAGGGAAAACTTGATTCGCGTTTTCAAGTCTCTCGGTCCTAAAGTGGTGACCGTTGTGGAAGAAGAAGCCGATTTTTGTAGCTCCAGGGAGGATTTCGTGAAGTGCTTCGAGGAGTGTCTGAAGTTCTACTCTCTCTACTTCGAGATGCTGGAGGAGAGTTTTCCCCCGACCAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGAAGCATAGTTAGGGTTTTGGCATGCTGTGGTGGTGGTGGTGGTGATGACATAGAAGACGAGGGAGAAGAGTTTGACTGTTGTGAGAGGAGGGAGAGAGGAACACAGTGGTGTGAGAGGCTGAGGAATGCATTTTCGCCGGTTGGTTTCAGCGACGATGTGGTCGATGATGTTAAAGCATTGCTGAAGAGATACCAACCAGGTTGGTCACTTGTAGTGTCTCAGGGTGATGATCATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTCTGGGCTTCAGCATGGAAACCCTAG 1359 0.5269 MHLSPYTTTPKKPSPHSDSHHHHNNHHHHHHSNNIVDEAAALDNNNMHRSNQSHTSTSRSSDSSEPNEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVISGLRDLTKEGLGVQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSSREDFVKCFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGGGGGDDIEDEGEEFDCCERRERGTQWCERLRNAFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00034 452 MobiDBLite consensus disorder prediction 47 63 - -
Vium6437g00034 452 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 441 IPR005202 -
Vium6437g00034 452 ProSiteProfiles GRAS family profile. 64 451 IPR005202 -
Vium6437g00034 452 MobiDBLite consensus disorder prediction 47 72 - -
Vium6437g00034 452 MobiDBLite consensus disorder prediction 1 32 - -
Vium6437g00034 452 MobiDBLite consensus disorder prediction 16 30 - -
Vium6437g00034 452 Pfam GRAS domain family 75 451 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00034 Vium-Chr6437 151398 153513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00034 48 452 GRAS Transcription Factor Family AT4G37650 51.748 1.44e-145 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6437g00034 GRAS 1.7e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00034 - - gmx:100818806 747.273