Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00024 ATGGAATACCCTTTTTCCTCCAAGGAAAGAGAAATTGGCGATTGGCAATCTTCCGGAACTCAGTTGGTGGGATCAACATCATTAGATAGCAGAATGAACAATTCAATATCAGAGGATATGCCCAATAGCTTCTCAGAGCTCATGAACTTTGATACTTATGCTGGTCTGTGCAACAGCCCATCCATATCTGATCATATTTTGGCTAATGAGCTTCCGTCCTTTGCTTCATTACCATATTCATTGCCTGATGGATTCAACCTAGTCCAACAGAACAATGGGCAATGCTATATGTCAGGAGTTGGTAGAAATGACAACGATATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGCCTGTCAGCAAGTGGACACCCTTCTTGGTTTCTTAAATGATGCAAATGAAGAAAATAACTTGAATTCTAAGCTAAAAATTAATGGCTCTTCTCAACATCTGAATAACTCTGATGCAGGAAATTATATAATGTCCAGGCCACCTGCTTTATCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGAATGGCGATCAATTCATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTAGCAGGGTACCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTTCCTAGGACTTCCTGGTCGTGTATTTACCTCCAAAGTTCATGAGTGGACGTCAAATGTTGGTTATTACAGTATGAGTGAGTACCTAAGGTTCGAGCATGCAATTAATCACCATGTTCGTGGATCAATTGCATTTCCCATTTTTGATGTGCACTCGGAATTGTTGTGTTGTGCTGTACTGGAAATTGTCACTACAAAGGAAAAGCCAGATTTCAACAGAGAAATTGAAATTGTTTGCCGTGCACTCCAGCTTGTAAATTTAAGCACTGCCAAGCCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGTTCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGCTTCCCTGTTGTTACAATGAGGGATCAAGAGGTGAAGTTACTAGGATACGAACTAAAGGGTGCCATTCAACTATTAGTGGAAAAAACATACTCTGCCTTGAAGAATCTGCTTGCTATATAACTGATAGAGCACTGGCAGGATTTGTCCGTGCATGCACAGAACATCATATTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCGATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGAATATGATATTGGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGTAGTTGCAATTAGGCTAAGGAGTACTTATACTAATCATGATGATTACATATTGGAATTCTTTCTGCCTGTTAACATGAGAGGGGGTTTAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACAATGCAGAGAATTTGTAGTAGTTTGAGGACGGTGTCAGATGCTGAATTATCAAGAATAGAAAGTTCACCAGAAGGATTTGAAAAGACAAATGCCCGCTATTTTCCTCCTTTGTCATGTCAAAACTCTGGAGTACCATTAATAAATGGTGACTATCATTCTGTTCCAATGATGTCATCGACTCCAACAAAAGCACGAGGCAATGAAATTGAGCCTTCTGCTAATCAGGGAAGATATGGAGCAAAAAGACAGGTCCAGAAAAATAAAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATCGGTGTTTGCCCGACAACTCTGAAAAGGATATGTAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTGGACTCTGTCCGAGGAGTGGAGGGAGGGTTGAAGTTTGACTCCTCTATGGGGGCATTCGTGGCAAGAGGATCAATCATCCAGGAAACTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAATATTATAAAAGACCCTGCACATATTACACAAGAAGCAGTCCCGGTACCTCGTGCACCTTGTAATGAAGTTGAGGAAGAATTGAAGAAAACCAATGCTTTTTCCGTTGGTTGTTGTGAAGATTCAAAATCAATGGCAATTGATGATGGGTCATGCGAAATGGAAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGCTCTGTTCTTCCAGAAGAACAGGATAAATGGACTGGGAACAAGAGTGGTTTGAGAGTAGAAAACTGTAAATGCAGTATTCTTGGTCAGAGTTCAAATTCCTTGATTGGTAAGGAGATGGACATTGGTGTAGATGGGGATGCTGAGGTTGTTGAACCTAACCACCCCAGTTCCTCAAGCTTGACAGACTCATCTAATGACTCTGGTTCAATGATGCATAGCATTTCATCAGGTTCTAAGAGCTTTAAGAACCAGAATCAGTCCAAAGTTAAGTCAACCATCGTTGATAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAGTTCGACCCATCTGCTGGTTGTTTCAGGTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGGTCATTCCAACTCAAATATCTAGATGATGAAGAGGAATGGGTAATGTTGGTGAATGATGCTGATTTGCAAGAGTGTCTAGACGTATTGGATGATATTGGTACATGCAGTGTCAGGTTTCTTGTTCGTGATTTGCCTTCCATTTTAAGCAGTTCTGGCAGTAGTAATAGCTACTTGGGAGGCAGCTCATAG 2919 0.4097 MEYPFSSKEREIGDWQSSGTQLVGSTSLDSRMNNSISEDMPNSFSELMNFDTYAGLCNSPSISDHILANELPSFASLPYSLPDGFNLVQQNNGQCYMSGVGRNDNDMESSPIYGEKVACQQVDTLLGFLNDANEENNLNSKLKINGSSQHLNNSDAGNYIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPIKNGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCFLGLPGRVFTSKVHEWTSNVGYYSMSEYLRFEHAINHHVRGSIAFPIFDVHSELLCCAVLEIVTTKEKPDFNREIEIVCRALQLVNLSTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWLPCCYNEGSRGEVTRIRTKGCHSTISGKNILCLEESACYITDRALAGFVRACTEHHIEEGKGIAGKALRSNHPFFCPDVKEYDIGEYPLVHHARKYNLNAVVAIRLRSTYTNHDDYILEFFLPVNMRGGLEQQLLLDNLSGTMQRICSSLRTVSDAELSRIESSPEGFEKTNARYFPPLSCQNSGVPLINGDYHSVPMMSSTPTKARGNEIEPSANQGRYGAKRQVQKNKSTSEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVRGVEGGLKFDSSMGAFVARGSIIQETDAHKSLLFPEKNIIKDPAHITQEAVPVPRAPCNEVEEELKKTNAFSVGCCEDSKSMAIDDGSCEMESLCTKVQDCPEQACLGSVLPEEQDKWTGNKSGLRVENCKCSILGQSSNSLIGKEMDIGVDGDAEVVEPNHPSSSSLTDSSNDSGSMMHSISSGSKSFKNQNQSKVKSTIVDSGSKLIVKAIYREDTIRFKFDPSAGCFRLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLDVLDDIGTCSVRFLVRDLPSILSSSGSSNSYLGGSS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00024 972 SMART PB1_new 872 954 IPR000270 GO:0005515
Vium6437g00024 972 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Vium6437g00024 972 MobiDBLite consensus disorder prediction 825 856 - -
Vium6437g00024 972 Pfam RWP-RK domain 603 651 IPR003035 -
Vium6437g00024 972 Gene3D - 869 950 - -
Vium6437g00024 972 MobiDBLite consensus disorder prediction 11 33 - -
Vium6437g00024 972 CDD PB1_NLP 873 953 IPR034891 -
Vium6437g00024 972 MobiDBLite consensus disorder prediction 1 33 - -
Vium6437g00024 972 PANTHER PROTEIN NLP8 135 964 IPR045012 GO:0003700
Vium6437g00024 972 ProSiteProfiles PB1 domain profile. 872 954 IPR000270 GO:0005515
Vium6437g00024 972 SUPERFAMILY CAD & PB1 domains 867 956 - -
Vium6437g00024 972 MobiDBLite consensus disorder prediction 820 856 - -
Vium6437g00024 972 Pfam PB1 domain 875 953 IPR000270 GO:0005515
Vium6437g00024 972 MobiDBLite consensus disorder prediction 569 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00024 Vium-Chr6437 86257 93427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00024 1 969 NLP Transcription Factor Family AT2G43500 48.780 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium6437g00024 PB1 6.3e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00024 - - gmx:100804426 1492.63