Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00011 ATGAATTGTTCATCATGGGGGACTTCAGAATCCAGAAGTTTGAGCTTAAAAGTGGATTTTCTGCCACAACAATGCCACAGGAGCAAAACGTTGAGCTTTCAATTCCAAGAACAGGATTCATCTTCGAATCATTCGGGTCAATCTTCTACCAGACTTGGTTCAGCACAATCCGGTGAAATGTCTGTTCAGCATAGTTCTACTGGTTCAACACCTCAGCACAGGTCATTTATGCAGAATCATGATTTCACCTTCCCTCCTCCACTACTGGATCACAGCCAAACACTTGCTCACTATGCTGATCCAGGCTATAGCAACCTTATGGCTTCTTCATATGTTCCACAGTCTATGCCAGTGGAAGCTGCTCCTATTAGAATTCCTCTGCAACTGGACATTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTGTACCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGAAAACCTTATCTTCACGAGTCCCGCCATCTACATGCAGTGAATAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTCCAACAATCAACTCGTACTCGTGGAAATACTGCAGAATCTAACATGCATAAAATAGAAAACTACAGAGATGGTGATAATGCAACATATGCATCTAACACTGCTGCAAGAAATATGCAGAATTATACATCTGATAAGGGTGGTGGCACCACTCATCAGCAGCCTCTATTTCTGTTGTTGATTGAATTGGAGAGTACAAATAGTTCTTCAGCACAGATCATTTTCTCTATGTCTAGTAAAGCTGCTTGTTGTTTTCTGTAA 843 0.414 MNCSSWGTSESRSLSLKVDFLPQQCHRSKTLSFQFQEQDSSSNHSGQSSTRLGSAQSGEMSVQHSSTGSTPQHRSFMQNHDFTFPPPLLDHSQTLAHYADPGYSNLMASSYVPQSMPVEAAPIRIPLQLDIKEEPIYVNSKQYHAILRRRLYRAKLEVQNKPIKDRKPYLHESRHLHAVNRARGAGGRFLNTKKLQQSTRTRGNTAESNMHKIENYRDGDNATYASNTAARNMQNYTSDKGGGTTHQQPLFLLLIELESTNSSSAQIIFSMSSKAACCFL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00011 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 189 IPR001289 GO:0003700|GO:0006355
Vium6437g00011 280 PRINTS CCAAT-binding transcription factor subunit B signature 166 189 IPR001289 GO:0003700|GO:0006355
Vium6437g00011 280 PRINTS CCAAT-binding transcription factor subunit B signature 135 157 IPR001289 GO:0003700|GO:0006355
Vium6437g00011 280 MobiDBLite consensus disorder prediction 33 79 - -
Vium6437g00011 280 ProSiteProfiles NF-YA/HAP2 family profile. 132 192 IPR001289 GO:0003700|GO:0006355
Vium6437g00011 280 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Vium6437g00011 280 MobiDBLite consensus disorder prediction 33 83 - -
Vium6437g00011 280 Gene3D - 132 193 - -
Vium6437g00011 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 24 235 IPR001289 GO:0003700|GO:0006355
Vium6437g00011 280 SMART cbf3 131 192 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00011 Vium-Chr6437 42038 48182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00011 97 223 CCAAT-HAP2 Transcription Factor Family AT1G17590 51.079 1.03e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium6437g00011 CBFB_NFYA 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00011 K08064 - gmx:100803893 332.028