Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00010 ATGAATTGTTCATCATGGGGGACTTCAGAATCCAGAAGTTTGAGCTTAAAAGTGGATTTTCTGCCACAACAATGCCACAGGAGCAAAACGTTGAGCTTTCAATTCCAAGAACAGGATTCATCTTCGACTCATTCGGGTCAATCTTCTACCAGACTTGGTTCAGCACAATCCGGTGAAATGTCTGTTCAGCATAGTTCTACTGGTTCAACACCTCAGCACAGGTCATTTATGCAGAATCATGATTTCACCTTCCCTCCTCCACTACTGGATCACAGCCAAACACTTGCTCACTATGCTGATCCAGGCTATAGCAACCTTATGGCTTCTTCATATGTTCCACAGTCTATGCCAGTGGAAGCTGCTCCTATTAGAATTCCTCTGCAACTGGACATTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTGTAACGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGAAAACCTTATCTTCACGAGTCCCGCCATCTACATGCAGTGAATAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTACAACAATCAACTCGTACTCGTGGAAATACTGCAGAATCTAACATGCATAAAATAGAAAACTACAGAGATGGTGATAATGCAACATATGCATCTAACACTGCTGCAAGAAATATGCAGAATTATACATCTGATAAGGGTGGTGGCACCACTCATCAGCAGCCTCTATTTGTCTACAAGTGA 765 0.4209 MNCSSWGTSESRSLSLKVDFLPQQCHRSKTLSFQFQEQDSSSTHSGQSSTRLGSAQSGEMSVQHSSTGSTPQHRSFMQNHDFTFPPPLLDHSQTLAHYADPGYSNLMASSYVPQSMPVEAAPIRIPLQLDIKEEPIYVNSKQYHAILRRRLXRAKLEVQNKPIKDRKPYLHESRHLHAVNRARGAGGRFLNTKKLQQSTRTRGNTAESNMHKIENYRDGDNATYASNTAARNMQNYTSDKGGGTTHQQPLFVYK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00010 254 ProSiteProfiles NF-YA/HAP2 family profile. 132 192 IPR001289 GO:0003700|GO:0006355
Vium6437g00010 254 MobiDBLite consensus disorder prediction 220 245 - -
Vium6437g00010 254 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Vium6437g00010 254 Gene3D - 132 193 - -
Vium6437g00010 254 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 24 235 IPR001289 GO:0003700|GO:0006355
Vium6437g00010 254 MobiDBLite consensus disorder prediction 32 79 - -
Vium6437g00010 254 MobiDBLite consensus disorder prediction 198 254 - -
Vium6437g00010 254 MobiDBLite consensus disorder prediction 32 83 - -
Vium6437g00010 254 PRINTS CCAAT-binding transcription factor subunit B signature 166 189 IPR001289 GO:0003700|GO:0006355
Vium6437g00010 254 PRINTS CCAAT-binding transcription factor subunit B signature 135 157 IPR001289 GO:0003700|GO:0006355
Vium6437g00010 254 SMART cbf3 131 192 IPR001289 GO:0003700|GO:0006355
Vium6437g00010 254 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 189 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00010 Vium-Chr6437 39448 42800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00010 97 223 CCAAT-HAP2 Transcription Factor Family AT1G17590 51.079 4.05e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium6437g00010 CBFB_NFYA 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00010 K08064 - gmx:100803893 328.176