Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6437g00009 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGCCGACGAGCAGGCATCATAAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGTCAATGTGATCCTGAGAAGGAGAATCTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTAGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGATTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGGTGGAGCAAAGAAGCCAGTTAAAGAGAAGTCTTCAGTTTCGAACAACAATGGAAACAAATCTAAGTCTAACTCTAAAGTGCGGGTTCCCGAAACCCAGGGCAGACAGTCAAAGGCCTTGTTACAACCAAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGCACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATAACCCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 753 0.4475 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGGGAKKPVKEKSSVSNNNGNKSKSNSKVRVPETQGRQSKALLQPKDEDEGLEEQDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6437g00009 250 MobiDBLite consensus disorder prediction 144 174 - -
Vium6437g00009 250 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vium6437g00009 250 Pfam PHD-finger 198 247 IPR019787 -
Vium6437g00009 250 CDD PHD_AL_plant 197 247 IPR044104 -
Vium6437g00009 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Vium6437g00009 250 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Vium6437g00009 250 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vium6437g00009 250 PANTHER CPG BINDING PROTEIN 5 250 IPR045104 GO:0006355|GO:0042393
Vium6437g00009 250 FunFam PHD finger alfin-like protein 190 246 - -
Vium6437g00009 250 MobiDBLite consensus disorder prediction 139 191 - -
Vium6437g00009 250 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Vium6437g00009 250 SMART PHD_3 197 245 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6437g00009 Vium-Chr6437 34039 38274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6437g00009 6 250 Alfin-like Transcription Factor Family AT3G42790 74.286 8.06e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium6437g00009 Alfin 3.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6437g00009 K26274 - gmx:100170696 414.461