LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6437g00006	ATGGGTTCAAATGCAGCAGAAGAAGAGTCTACCTTGATCGCCATTGATAGCGATCAGAACAGCCAACATGCAGTCAAATGGGCTGTGGAATATCTCTTCAAGAACAACTCTTCCTGCACCCTCCTTCACGTCAGAACTAAGAACTTATATCACAATGATTTGGAAGTTTTCCCTAAGCAAGGTCGTACGCCAACAGAAGAAGAATTGCAACAGATTTTTCTTGCCTTTCGAGGATTTTGTGCTCGAAAAAGGGTCGCAGTTAAAGAGATAGTTCTGCAAGACACTGACGTAGTAAATGCGCTTACTAATTACATAATTCTGAATTCTATCAACAATGTTGTCGTTGGTGCTTCTCGCTCCAACGCTCTTCTAAGGAAATTTAAAGATGTAGATGTGCCAACAGGCTTGTTAAGATCTGTGCCACAATCTTGCATGGTGCATATCATATCAAAAAGAAAAGTGCAGAGTATTCGACCAGCAGGTCATTCTCATCAGAATATTAGTATCGCACCATCAAAATCTCTAAAAGCCATCAGGGAAAGTTTTCGGTCCAAAGATTTAAACAGAAGATCGCTCCAAATTAAATTTTGGCAAAGCTCAAACAATGATGGGGTATCACCAATGACACCACACAAGAACAATGGAGAGACTGATTCTACAAAACTATCTGATGAAACCAGTTCTTTACAAACTTCATCCAATCAAAGTTTCCTTAAAGAAGACACTTCAAGGTTGTTTGATCATCAAACGAGTGAGACATCACATGGAAAACAAAATGTAGTCATTAATTCGAATTGTAGGAGCAAATCTTCCAAAAAGCCTCCGACAACGAAGCATGAAAATATAAGGCAAGAAGAGGGAGACATGCATGAAGAAGAAGAGAGGAATAAACCATCAAATGAAATTGCACCAAACAAAGTTCTATTTAAAAGATACAACATTAGAGAAATCGAAGTAGCAACTAATTACTTTAACAATGCCCTGAAAATCGGTGAAGGTTCATATGGACCTGTTTTCAAAGGGGTGCTTGATAACATTGTTGTTGCTGTCAAGGCTCTCAGACCTGACATAACCCATGGGGAGAAGCAGTTTCAACAAGAGGTTAGTGTTTTGAGCACAATAAGACATTCAAACATGGTTAAGCTTTTGGGTGCATGTCCGGAGTATGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGTTTAGAAGATCGTCTATTCCAGAAAGATAACACACCAGTAATTCCATGGAAAGTTAGATTCAAAATAGCATCAGAAATTGCCACAGGCCTTCTTTTCCTTCATCAGACAAAGCCTGAGCCTATTGTGCACCGAGACCTGAAACCGGCAAACATTTTGTTGGACTGTAACTATGGTAGCAAGATCACTGATGTGGGTTTGGCAAGGCTAGTTCCACCTGCTATACCGGACAAAACCACTCAATACCATAAGACAACTGCAGCTGGTACATTTTGCTACATTGATCCAGAATATCAGCAAACAGGACTATTGGGGGTTAAATCAGACATTTACTCACTGGGTGTAGTGCTGTTGCAAATTATAACTGGAAAGCCTCCTATGGGTGTGGCTCACTTTGTTCAAGAGGCTATAGAAAAAGGTACATTTTCTGAGGTTCTTGATCCTAATGTCATGGATTGGCCTGTTGAGGACACTTTGTCATTTGCTAAGTTGGCTTTGAAGTGTTGTGAGATGAGAAAACGAGATAGACCAGATCTTGCTTCTGTCATTTTGCCAGAGTTGAGTCGGCTTACAAATTTAGGAGTAGTGATTACATTTCCCAAAGATAAAATCATGGTGTAA	1821	0.3987	MGSNAAEEESTLIAIDSDQNSQHAVKWAVEYLFKNNSSCTLLHVRTKNLYHNDLEVFPKQGRTPTEEELQQIFLAFRGFCARKRVAVKEIVLQDTDVVNALTNYIILNSINNVVVGASRSNALLRKFKDVDVPTGLLRSVPQSCMVHIISKRKVQSIRPAGHSHQNISIAPSKSLKAIRESFRSKDLNRRSLQIKFWQSSNNDGVSPMTPHKNNGETDSTKLSDETSSLQTSSNQSFLKEDTSRLFDHQTSETSHGKQNVVINSNCRSKSSKKPPTTKHENIRQEEGDMHEEEERNKPSNEIAPNKVLFKRYNIREIEVATNYFNNALKIGEGSYGPVFKGVLDNIVVAVKALRPDITHGEKQFQQEVSVLSTIRHSNMVKLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPVIPWKVRFKIASEIATGLLFLHQTKPEPIVHRDLKPANILLDCNYGSKITDVGLARLVPPAIPDKTTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKPPMGVAHFVQEAIEKGTFSEVLDPNVMDWPVEDTLSFAKLALKCCEMRKRDRPDLASVILPELSRLTNLGVVITFPKDKIMV	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6437g00006	606	SUPERFAMILY	Protein kinase-like (PK-like)	301	583	IPR011009	-
	Vium6437g00006	606	CDD	STK_N	13	151	-	-
	Vium6437g00006	606	MobiDBLite	consensus disorder prediction	273	300	-	-
	Vium6437g00006	606	Pfam	Protein kinase domain	327	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6437g00006	606	Pfam	Universal stress protein family	12	146	IPR006016	-
	Vium6437g00006	606	ProSiteProfiles	Protein kinase domain profile.	324	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6437g00006	606	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Vium6437g00006	606	Gene3D	HUPs	10	150	IPR014729	-
	Vium6437g00006	606	MobiDBLite	consensus disorder prediction	252	271	-	-
	Vium6437g00006	606	Gene3D	Transferase(Phosphotransferase) domain 1	397	594	-	-
	Vium6437g00006	606	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	12	127	-	-
	Vium6437g00006	606	Gene3D	Phosphorylase Kinase; domain 1	293	396	-	-
	Vium6437g00006	606	MobiDBLite	consensus disorder prediction	198	240	-	-
	Vium6437g00006	606	MobiDBLite	consensus disorder prediction	198	300	-	-
	Vium6437g00006	606	FunFam	Os07g0541700 protein	397	489	-	-
	Vium6437g00006	606	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	299	396	-	-
	Vium6437g00006	606	SMART	serkin_6	324	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6437g00006	606	PANTHER	OS02G0152300 PROTEIN	283	594	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6437g00006	Vium-Chr6437	18461	21714	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6437g00006	280	594	Receptor kinase-like Gene Family	AT5G12000	64.465	4.06e-150	444

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vium6437g00006		Pkinase	2.8e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6437g00006	-		-	vra:106760620	1134.78