Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00060 ATGCATTCCACCATCTTCACCATGTGGCTTATTTTCTTGTCTTGCTTCTTTTGTGCTGTATCTGCACTCAACTCCGATGGGGTCACCCTGTTGTCACTCATGAGGCACTGGAAATCCGTGCCTACTTCCATAAACACCACCTGGCTTGCCTCTGATTCCACTCCATGCTCCTCCTGGGTAGGACTTCAATGTGACCATGCCCACCATGTCATCTACCTTAACCTCACAGGTTATGGGATTTCTGGTCAATTAGGTCCTGAAATTGGAAATATTTCTCGCCTACAGTACTTAGACCTTACAGGTAACAACCTCAATGGCCCAATACCTCACTCCTTAAAAAACTTGCACAGCCTCCAGTTTCTCAGCCTTGCTCAAAATCAGCTATCTGGTGAAATTCCACATTCCTTGTCTCAAATACCTGGACTGCAGCTTGTTGATCTATCATATAACCTTTTAAGGGGTTCCATCCCCACCAGCATTGGGAACATGTCTGAGCTCCTGCTGTTGTATCTCCATAGTAACCAGTTGTCCGAGACAATTCCTTCATCCATTGGGAATTGCAGTAAATTGCTAGAATTGTATCTGGATAGGAATCAGTTGGAGGGTGTCCTGCCTCAGAGTCTAAATAATCTCGGTCTTCTGGATCATTTTGATGTCTCCGGTAATAGACTTACGGGTACTGTTTCTTTGGGTTCAACTAGTTGCAAAAATTTAGTAGTTTTGGATCTCTCAGACAATGACTTTAGTGGTGGCCTTCCCTCAAGCATGGGGAACTGTAGTAGTTTATCGGAACTTGTTGCCGTGAACTGCAATTTGATAGGGAATATCCCACCCTCCTTTGGCCTACTGACCAAGCTTTCTATTCTATATCTTCCACTAAACCGTTTATCTGGAAAAATACCTCCAGAAATTGGCAACTGCAACTCTCTAACAGAGTTACAGCTGTATTCCAATCGACTTGAGGGAAACATTCCAAGTGAGTTGGGAAAACTAAGAAAACTGGTGGATTTGCAATTGTTTTCAAATCAATTGACAGGTGAAATTCCACTCAGCATCTGGAAGATTAAAGGTCTTCAGTCTCTGCATCTGTATAATAACAGTCTTTCTGGAGAATTGCCATTGGAGATTGCAGAGCTCAGACAGCTGAAAAACATCACTTTGTTTAACAACCAGTTTTCCGGTGTCATACCTCAAAACTTGGGAATTAACAGCAGTTTAGTTCTGTTGGACTTCACAAGTAATAAATTCACTGGCAACATCCCACCAAATCTGTGTTTTGGCAAGAAGTTAAAGATCCTGAATTTGGGCATCAATCAACTTCAAGGTAGCGTACCTCCTTATGTTGGGAGCTGTACAACCCTTACAAGATTAATCCTCAAACAGAATAATTTTACTGGGCCTCTTCCTCATTTTAAGAGCTGTCAAAATCTCGTTTATATGGAAATTGGCAACAACAAAATTCATGGAGCAATTCCATTAAGTTTGGGAAACTGCACACGTATCACTGACTTAATTCTGCCCATGAACAAATTTACAGGGCCAATACCATCAGAGCTAGGGAACCTAGTGAATCTTCGGACTTTGAATCTGGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTATCAAAGTGCACCCAAATGGACAAGTTTGATGTCGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTCTGCAGAGCTGGACAAGGTTAACCACGTTAATTTTGAGCGAGAATCGCTTTAGTGGGGGCCTCCCATCTTTCCTGTCGGAATTCAAGATGATTTCTGAGCTACAACTTGGTGGCAATCTGTTCGGAGGCAAAATTCCCATATCAGTTGGAGCAATGCAGAACTTGATCTATGGTTTGAATCTAAGTTCAAATGGGTTGACTGGTGAAATTCCTGTAGAGATTAGGAACCTGAAAATGTTGCGAACACTAGCTCTGTCTCATAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCATCTCCTTAGTGGAACTCAATATTTCATACAATTCTTTTAGTGGTATTGTACCAAAGGCGCTGATGAAGTTGCTTAATTGTCCCTTGTCATCGTTCCTGGGCAATCCTGGCCTATGCATCAGATGTTCAACGTCAGATTGCTTGGCTTGCTCGGAAAGAAGCTCTCTAAAATCATGCGATGACAAATCTGCTAAACGGAAAGGCTTGAGTAAAGTTCAAATTGTGAAGATGTTTCTTGGATTATCCATATTTCTTGGTTTGTCGTTGCTGGCATTAGTTTGTGTTGTTGTTTTTGGGAGAACAGCTAAGCAGGAAAACCATATCTCTTCTGAACAGGGTTCTTCATCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTAAATGATCGATATATTATTGGTAGAGGAGCCCACGGAATTGTTTATAAAGTTCTGATAGGTCCAGACAAAGCTTTTGCGGTGAAAAAGATAAGATTTACTGCCAGTCAAGGTAAGAACTCGAGCATGGCCAGAGAAATTCAGACCCTTGGGAAAATCAGGCATCGAAATCTTGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTGTGGTCTAATTTTGTACAGCTACATGGTAAATGGAAGTCTCCATGATGTTTTGCATGAAAGGGCTCCAACACCAACCTTAAAGTGGAATGTCCGGTATGAGATAGCTGTTGGAATTGCTCATGGATTAGCTTATCTCCACTATGACTGTGACCCTCCCATCGTGCACCGAGACATCAAGCCCAGCAATATACTTCTAGACTCCGACATGGTGCCTCACATTGCTGACTTTGGTATTGCCAAACTTCTGGAACAGTCTTCTCCTGCTTCAAATACTTCCATTGCTGTGCCGGGTACAATTGGTTATATTGCTCCAGAGAATGCTTATGCAACAAGTAGTAGGGAGTCT 2934 0.4206 MHSTIFTMWLIFLSCFFCAVSALNSDGVTLLSLMRHWKSVPTSINTTWLASDSTPCSSWVGLQCDHAHHVIYLNLTGYGISGQLGPEIGNISRLQYLDLTGNNLNGPIPHSLKNLHSLQFLSLAQNQLSGEIPHSLSQIPGLQLVDLSYNLLRGSIPTSIGNMSELLLLYLHSNQLSETIPSSIGNCSKLLELYLDRNQLEGVLPQSLNNLGLLDHFDVSGNRLTGTVSLGSTSCKNLVVLDLSDNDFSGGLPSSMGNCSSLSELVAVNCNLIGNIPPSFGLLTKLSILYLPLNRLSGKIPPEIGNCNSLTELQLYSNRLEGNIPSELGKLRKLVDLQLFSNQLTGEIPLSIWKIKGLQSLHLYNNSLSGELPLEIAELRQLKNITLFNNQFSGVIPQNLGINSSLVLLDFTSNKFTGNIPPNLCFGKKLKILNLGINQLQGSVPPYVGSCTTLTRLILKQNNFTGPLPHFKSCQNLVYMEIGNNKIHGAIPLSLGNCTRITDLILPMNKFTGPIPSELGNLVNLRTLNLAHNNLEGPLPSQLSKCTQMDKFDVGFNFLNGSLPSSLQSWTRLTTLILSENRFSGGLPSFLSEFKMISELQLGGNLFGGKIPISVGAMQNLIYGLNLSSNGLTGEIPVEIRNLKMLRTLALSHNNLTGSIEVLGELISLVELNISYNSFSGIVPKALMKLLNCPLSSFLGNPGLCIRCSTSDCLACSERSSLKSCDDKSAKRKGLSKVQIVKMFLGLSIFLGLSLLALVCVVVFGRTAKQENHISSEQGSSSLLNKVMEATENLNDRYIIGRGAHGIVYKVLIGPDKAFAVKKIRFTASQGKNSSMAREIQTLGKIRHRNLVKLEDFWLRKDCGLILYSYMVNGSLHDVLHERAPTPTLKWNVRYEIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMVPHIADFGIAKLLEQSSPASNTSIAVPGTIGYIAPENAYATSSRES 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00060 978 Gene3D Ribonuclease Inhibitor 137 232 IPR032675 -
Vium6436g00060 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Vium6436g00060 978 FunFam Os07g0541700 protein 871 961 - -
Vium6436g00060 978 Pfam Leucine rich repeat 92 152 IPR001611 GO:0005515
Vium6436g00060 978 Pfam Leucine rich repeat 168 224 IPR001611 GO:0005515
Vium6436g00060 978 SMART LRR_typ_2 666 689 IPR003591 -
Vium6436g00060 978 SMART LRR_typ_2 188 210 IPR003591 -
Vium6436g00060 978 SMART LRR_typ_2 163 187 IPR003591 -
Vium6436g00060 978 SMART LRR_typ_2 283 307 IPR003591 -
Vium6436g00060 978 SMART LRR_typ_2 522 546 IPR003591 -
Vium6436g00060 978 SMART LRR_typ_2 115 139 IPR003591 -
Vium6436g00060 978 SMART LRR_typ_2 643 665 IPR003591 -
Vium6436g00060 978 SMART serkin_6 794 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00060 978 FunFam Leucine-rich repeat receptor protein kinase EMS1 134 230 - -
Vium6436g00060 978 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 761 870 - -
Vium6436g00060 978 Gene3D Ribonuclease Inhibitor 471 563 IPR032675 -
Vium6436g00060 978 Gene3D Ribonuclease Inhibitor 233 322 IPR032675 -
Vium6436g00060 978 Gene3D Phosphorylase Kinase; domain 1 764 870 - -
Vium6436g00060 978 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515
Vium6436g00060 978 Gene3D Ribonuclease Inhibitor 564 737 IPR032675 -
Vium6436g00060 978 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 324 - -
Vium6436g00060 978 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 326 424 - -
Vium6436g00060 978 Gene3D Ribonuclease Inhibitor 323 470 IPR032675 -
Vium6436g00060 978 Gene3D Transferase(Phosphotransferase) domain 1 871 976 - -
Vium6436g00060 978 Pfam Protein kinase domain 799 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00060 978 SUPERFAMILY RNI-like 73 446 - -
Vium6436g00060 978 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Vium6436g00060 978 SUPERFAMILY L domain-like 385 714 - -
Vium6436g00060 978 FunFam Leucine-rich repeat receptor-like kinase 27 133 - -
Vium6436g00060 978 ProSitePatterns Protein kinases ATP-binding region signature. 800 823 IPR017441 GO:0005524
Vium6436g00060 978 ProSiteProfiles Protein kinase domain profile. 794 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00060 978 ProSiteProfiles Leucine-rich repeat profile. 645 667 IPR001611 GO:0005515
Vium6436g00060 978 SUPERFAMILY Protein kinase-like (PK-like) 779 972 IPR011009 -
Vium6436g00060 978 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 428 714 - -
Vium6436g00060 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 337 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00060 Vium-Chr6436 352591 355762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00060 14 978 Receptor kinase-like Gene Family AT1G73080 52.156 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium6436g00060 Pkinase 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00060 - - vum:124843252 1936.77