Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00057 ATGGGTTCGCTCGAGGAAAAGGTAGAGCGCGATCCTTTCGACAACCTTAACGATGACGACGACCACACTCCCTTCGCTTCTTCCACATCCGCCTCCAAAGTCCGCCCCTTCAATTTCGAGACCACCGTTGTCGATTTACGGAGCTCCTCCGCCTTCAACATTAGACGCATCAGCAGGAGTATATATTTCGTCTTAATTAAGGCCAAGATCAACATCTTGCTTCCGTTTGGTCCTTTCGCTATTCTACTGCATTATCTCACCGGACACCAAGGATGGGTCTTCTTCTTCACGTTATTGGGTATTACTCCTTTGGCCGAACGTCTCGGTTATACCACCGAGCAGCTTGCCTTCTTTACGGGACCAACAGTTGGGGGTCTGCTTAATGCCACATTTGGCAATGCAACTGAAATGATTATATCCATTTACGCATTGAAAAGCAATATGATAAGGGTTGTGCAGCAATCTTTACTCGGTTCTATCCTGTCAAATATGCTTCTGGTTCTTGGCTGTGCTTTCTTTACTGGTGGCATTGCCCACTACAAAAAAGTACAGGTTTTTGATAAGGCAGCTGCCATTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATTCTGTTTCCTGCTGTGCTTTACTTTACTCACTCAGAAGTTCATGAAGGGAAGTCAGTGTTGTCTCTATCAAGATTTAGCAGCTGCATAATGCTGCTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATACTCCAGTTAATGAGGAAGGAGATGATGGTGAAAATTCTGATGAGGAAGAAGAACTTGAATTAACTCAATGGGAGGCAATAGCCTGGCTTGCTATTTTGACAGCATGGATGTCTATATTGTCTGGATACCTTGTAGATACCATAGAGGGTGCATCTAAGTCATTAAATATGTCAATGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTTGGCAACGCTGCAGAACATGCCAGTGCCATCATGTTTGCCGTAAAGGACAAGCTTGATATTACTATTGGAGTTGCCATAGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACGCTTTTTATCACCGTGTTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTGTGCTGTGCTATCTTATAGTTGCTGCCAGTTTTTTTGTACATGATGACCCTATTAAAAGTGGTAATGACTAA 1305 0.4268 MGSLEEKVERDPFDNLNDDDDHTPFASSTSASKVRPFNFETTVVDLRSSSAFNIRRISRSIYFVLIKAKINILLPFGPFAILLHYLTGHQGWVFFFTLLGITPLAERLGYTTEQLAFFTGPTVGGLLNATFGNATEMIISIYALKSNMIRVVQQSLLGSILSNMLLVLGCAFFTGGIAHYKKVQVFDKAAAIVNSGLLLMAVMGILFPAVLYFTHSEVHEGKSVLSLSRFSSCIMLLAYASYLFFQLRSQQNVYTPVNEEGDDGENSDEEEELELTQWEAIAWLAILTAWMSILSGYLVDTIEGASKSLNMSMAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLVLCYLIVAASFFVHDDPIKSGND 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00057 434 MobiDBLite consensus disorder prediction 1 21 - -
Vium6436g00057 434 FunFam Vacuolar cation/proton exchanger 121 260 - -
Vium6436g00057 434 FunFam Vacuolar cation/proton exchanger 268 424 - -
Vium6436g00057 434 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 45 428 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium6436g00057 434 NCBIfam calcium/proton exchanger 64 423 - -
Vium6436g00057 434 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016020|GO:0055085
Vium6436g00057 434 Pfam Sodium/calcium exchanger protein 281 420 IPR004837 GO:0016020|GO:0055085
Vium6436g00057 434 NCBIfam calcium/proton exchanger 73 423 IPR004798 GO:0006816|GO:0015369
Vium6436g00057 434 MobiDBLite consensus disorder prediction 1 29 - -
Vium6436g00057 434 Gene3D - 267 424 IPR044880 -
Vium6436g00057 434 Gene3D - 121 259 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00057 Vium-Chr6436 320025 332671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00057 59 432 Antiporters AT3G13320 73.867 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00057 K07300 - gmx:100806000 708.368