Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00054 ATGATGGAGTCAAGAAAAAGCGCAGTGTTGCTGATATTTGTTTCAATTTCAGTGTGGCAGCTGCAGGGTGGAAGTAGCAGTGTTGTGGTATCGAAGGATGGAAGTGGAGATTATAGAACGGTGGGTGAAGCCATTATGCAGGCTCCTGACATGAGTGATAAACCCTATACCATTCACGTACGAGCAGGCACTTATCAAGAGTACCTCTTCGTTCCTCCTCATAAGACTAACATTAGGCTCCTTGGAGATGGACCTCACCACACCAAAATAGTAGGCTACCAAAATGGTTCCACCATTGACATTCGTGGAGATGGGTTCATGGCAGCGAAGATGGGATTTGCGAACTGGGCAGGGCTGAACGCAAGCAGTGCAGTGGCGGTTCGGAACGAGGCAGACAAGAGCATATTCTTCCAATGCTCCATCGAAGGACTCCAGGACACACTGTGGGCGGTTTCCGGGCGTCAGTTCTACAAAAAGTGCGATATCTACGGCACGGTGGACTTCATCTACGGCAGCGCAGCGGCGGTGTTCCAGGACTGCATGGTGTACGCGCGGTACAGAGAGTACGTGACGTTCACGGCTCAGTCGCGAGAGGATCCGAATGAGAAAAGCGGGTTCAGTTTCCAAAGATGCGAATTCAGAATGTCGCCGGAGGATGAGAACAGAAAGACAGAGGTGCATGCGAGCCTTGGGCGTCCCCTGAGACCCTATTCCACCGTCGCCATCCTCCACTCGTACATTGACTCCATCGTCGATCCTAAAGGTTGGGAGCCCATGCCCCACCAGCCCACCGACAAAGTCACCTACANTTTGTATGCGTATGTATTTGACAGTGACCTAATTAGTCGGTGGACGTCGGTGACACTGTGA 870 0.5161 MMESRKSAVLLIFVSISVWQLQGGSSSVVVSKDGSGDYRTVGEAIMQAPDMSDKPYTIHVRAGTYQEYLFVPPHKTNIRLLGDGPHHTKIVGYQNGSTIDIRGDGFMAAKMGFANWAGLNASSAVAVRNEADKSIFFQCSIEGLQDTLWAVSGRQFYKKCDIYGTVDFIYGSAAAVFQDCMVYARYREYVTFTAQSREDPNEKSGFSFQRCEFRMSPEDENRKTEVHASLGRPLRPYSTVAILHSYIDSIVDPKGWEPMPHQPTDKVTYXLYAYVFDSDLISRWTSVTL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00054 289 Gene3D - 25 279 IPR012334 -
Vium6436g00054 289 SUPERFAMILY Pectin lyase-like 27 264 IPR011050 -
Vium6436g00054 289 PANTHER PECTINESTERASE 26 270 - -
Vium6436g00054 289 Pfam Pectinesterase 28 260 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00054 Vium-Chr6436 313919 315848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00054 26 258 Carbohydrate Esterase AT1G11370 42.449 1.42e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00054 K01051 - gmx:102665195 426.402