Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00053 ATGGCAGCGAAGATGGGATTTGCGAACTGGGCAGGGCTGAACGCAAGCAGTGCAGTGGCGGTTCGGAACGAGGCAGACAAGAGCATATTCTTCCAATGCTCCATCGAAGGACTCCAGGACACACTGTGGGCGGTTTCCGGGCGTCAGTTCTACAAAAAGTGCGATATCTACGGCACGGTGGACTTCATCTACGGCAGCGCAGCGGCGGTGTTCCAGGACTGCATGGTGTACGCGCGGTACAGAGAGTACGTGACGTTCACGGCTCAGTCGCGAGAGGATCCGAATGAGAAAAGCGGGTTCAGTTTCCAAAGATGCGAATTCAGAATGTCGCCGGAGGATGAGAACAGAAAGAAAGAGGTGCATGCGAGCCTTGGGCGTCCCCTGAGACCCTATTCCACCGTCGCCATCCTCCACTCGTACATTGACTCCATCGTCGATCCTAAAGGTTGGGAGCCCATGCCCCACCAGCCCACCGACAAAGTCACCTACATCGAGTTTCAGAATGTTGGGCCGGGCTCTAACACCGACGACAGAGTTAACTGGGCCGGCGTCACGGTCCTTAGATACCCGGCCCAAGCAGCCCATTTCACTGCCTCCTATCTCTTAGACGCCGACTCTTGGATTCCCTCTTCCGGTGTTCCGTACAACACCGGACTATAG 660 0.5606 MAAKMGFANWAGLNASSAVAVRNEADKSIFFQCSIEGLQDTLWAVSGRQFYKKCDIYGTVDFIYGSAAAVFQDCMVYARYREYVTFTAQSREDPNEKSGFSFQRCEFRMSPEDENRKKEVHASLGRPLRPYSTVAILHSYIDSIVDPKGWEPMPHQPTDKVTYIEFQNVGPGSNTDDRVNWAGVTVLRYPAQAAHFTASYLLDADSWIPSSGVPYNTGL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00053 219 Pfam Pectinesterase 1 204 IPR000070 GO:0030599|GO:0042545
Vium6436g00053 219 SUPERFAMILY Pectin lyase-like 3 217 IPR011050 -
Vium6436g00053 219 Gene3D - 1 219 IPR012334 -
Vium6436g00053 219 PANTHER PECTINESTERASE 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00053 Vium-Chr6436 312631 313925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00053 1 219 Carbohydrate Esterase AT3G10720 43.946 2.74e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00053 K01051 - vum:124843274 456.832