Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00047 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTGAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATCCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGAGTAAAACCTTGGGATCTGCTGGCACTTCATCAAGTCAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCTCGTCTCTAGTACAAACCCAATCTGCTAACAATAATGCTCCTGCAACAGATGTCACAACTACAAATGTGACTACGGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATAGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCTCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCAGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAAATAGTCAGACAACTGAAACAGGTGGGGTCACTGCCGGAGCTGTTCCTGGTGTCCCTAACTCTTCTCCCTTGAATATGTTTCCACAGGAAGCAATTTCTGGTGTTGGAGCCGGAATTGGGTCACTTGACTTTCTAAGAAACAATCCCCAGTTTCAAGCATTGCGATCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAGCTTGGAAAGCAGAATCCTGGTCTCTTAAGAGTAATTCAAGAGAATCATGCTGAGTTTCTCCAGTTGATTAACGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAACAAGACATGCCTCATGCAATCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCTGGAGATTTTGAGGATTAA 1104 0.4402 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGTSSSQPASNPPITVSTPNSSSLVQTQSANNNAPATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIIDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPNSQTTETGGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRVIQENHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00047 367 FunFam UV excision repair protein RAD23 B 232 298 - -
Vium6436g00047 367 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vium6436g00047 367 Pfam UBA/TS-N domain 323 358 IPR015940 -
Vium6436g00047 367 Pfam UBA/TS-N domain 144 182 IPR015940 -
Vium6436g00047 367 SMART uba_6 323 360 IPR015940 -
Vium6436g00047 367 SMART uba_6 144 184 IPR015940 -
Vium6436g00047 367 MobiDBLite consensus disorder prediction 81 123 - -
Vium6436g00047 367 CDD Ubl_Rad23 1 74 - -
Vium6436g00047 367 Gene3D - 233 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6436g00047 367 SMART ubq_7 1 75 IPR000626 GO:0005515
Vium6436g00047 367 Pfam XPC-binding domain 242 297 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vium6436g00047 367 FunFam UV excision repair protein RAD23 homolog 137 187 - -
Vium6436g00047 367 NCBIfam UV excision repair protein Rad23 1 366 IPR004806 GO:0006289
Vium6436g00047 367 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 356 - -
Vium6436g00047 367 FunFam UV excision repair protein RAD23 1 80 - -
Vium6436g00047 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Vium6436g00047 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Vium6436g00047 367 CDD UBA1_Rad23_plant 138 187 - -
Vium6436g00047 367 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Vium6436g00047 367 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Vium6436g00047 367 PRINTS DNA repair protein Rad23 signature 268 290 IPR004806 GO:0006289
Vium6436g00047 367 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Vium6436g00047 367 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vium6436g00047 367 SUPERFAMILY UBA-like 302 364 IPR009060 GO:0005515
Vium6436g00047 367 SMART CBM 240 283 IPR006636 -
Vium6436g00047 367 Gene3D - 1 80 - -
Vium6436g00047 367 SUPERFAMILY XPC-binding domain 240 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6436g00047 367 SUPERFAMILY UBA-like 141 191 IPR009060 GO:0005515
Vium6436g00047 367 Gene3D - 314 362 - -
Vium6436g00047 367 Gene3D - 137 187 - -
Vium6436g00047 367 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Vium6436g00047 367 FunFam UV excision repair protein RAD23 homolog 314 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00047 Vium-Chr6436 280901 286500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00047 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 41.892 4.60e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00047 K10839 - gmx:100804038 619.772