Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00046 ATGGAATTTGAGAGTTACGAGGATGTCTATTACTTCTATAATTGGTACGCCAAGGAACAGGGATTTGGGATTAGGGTTACAAATACCTGGTACCGCAAGACCAAGGAACGTTACAGAGCGAAACTTAGCTGCAGCAGCGCAGGCTTTAAGAAAAGAACGGAGGCTAATCGCCCCAGACCCGAAACCAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGATTCCACAAGATGGAGAATTATTGAAGTTGAGCTTGATCACAATCACTTGATTAACCCCACCAGTGGCAAGTTTTACAAGTCCCATAAGCAAGTTGCTCTTGGCAGCAAAAGAACCTTCCACTTTGATGCTACTGCTGCTCAACAGGTTCACAAAATTAGGATGTTTCGAACTCTCATAATCGATGCTGAGGATGATGCCAGTGTACATCCTGATGAAGGGAAATCTCCAAATCCGAAAGGCTTGTACTCCAACAATCAGTTGAAGCTGAAGAAAGGTGATGCTGAAGCAATTTTGAATTTTTTCAGTCACCAGCAATTGGCTGATCCAGACTTCTTCTATGTGGTCGATGTCAATGAGAGAGGGTGTTTCAGGAATTTGTTCTGGGCTGATGCAAAGTCCAGGGTTGCATACAGTTATTTCAGTGATGTTGTAGCTATTGACACTACATGTTTGAACGATGCATATGAAGTTCCCCTGGTTATGTTCCTTGGGATAAACCACCATAAACAATCCATCTTGTTTGGCTGTGGACTGCTTGCTTGTGAAACGGTTGAATCATACACTTGGCTGTTCAGGGCGTGGCTTACTTGTATCTTAGGACGCCCCCCACAAGTTATCATTACCAACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTCTTTCCAAGATCTACACACTGCCTTTGCTTGTTTAATATCATGCAAAAAGTTCCAGAAAAACTGGGAGCCTGCGTACAGTATGAAGCAATCAATGCAGCTTTGAGCAGAGCAGTATATTCCTCTCTCAGGGCTGAGGAATTTGAAGCAACTTGGGAGGATATGATGAAAAGCAGCGAAATTAGAGGCAATAAATGGCTCCAATCTTTGTATGAGGAACGGAAACGGTGGGCTCCAGTTTATCTGAAGGAAATCTTCTTGGCAGGAATATTTTCAGTTCAACAAAGTGATGATGCTGTATCATTTTTCTTTGATGGGTACCTCGATGAACAGACTTCTCTGAAAGAATTTTTAGAAAAATATGATCAGACTTTACAGACAAAGCGACAACTGGAAGCTTTGGCAGATTTGGATTCAAAATCTTGTAGCTTTGCAGCAAAATCGAGGTCTTACTTTGAATTGCAGGTTTCAAAGTTATATAGTAATGAAATATTAAGAATGTTTGAAAGGGAAGTGGAAGGAATGTTTTCTTGCTTTAACTCGAGACAGATAAATGTTGATGGAGCGGTGATGACGTACATTGTGGAAGAACAAGTTGAAGTTGAGGGAAATCATAGAGGTGCAAGAGATTATGAGGTGTGTTATAATGAAGCTGAAATGGAGGTCTTCTGCATCTGTGGCATGTTCAATTTCAGAGGTTACTTGTGCAGGCATGCTTTGTTTATTTTAAGCCAAAATGGGATAAAAGAGATCCCAACGCAGTACATTGTTTCACGGTGGAGAAAAGATATGAAGCGGAGCAATGTGTACGATCACAACTCTAGTGGCATTGATATAAGTAATCCAGTTCATAGGTATGATCATTTATACAGACAGATTGTGAAGGTTGTTGAGGAAGGTAAGAAATCTCATGATCATTACGAGACTGCACTACAAGCAATGGAAAATATATTGAGGAAGCTTCATATTGTAAACGTTGAGGATCCCGACAACATAATGTCCAAGCATTGA 1899 0.4102 MEFESYEDVYYFYNWYAKEQGFGIRVTNTWYRKTKERYRAKLSCSSAGFKKRTEANRPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLINPTSGKFYKSHKQVALGSKRTFHFDATAAQQVHKIRMFRTLIIDAEDDASVHPDEGKSPNPKGLYSNNQLKLKKGDAEAILNFFSHQQLADPDFFYVVDVNERGCFRNLFWADAKSRVAYSYFSDVVAIDTTCLNDAYEVPLVMFLGINHHKQSILFGCGLLACETVESYTWLFRAWLTCILGRPPQVIITNQCGILQTVVADVFPRSTHCLCLFNIMQKVPEKLGACVQYEAINAALSRAVYSSLRAEEFEATWEDMMKSSEIRGNKWLQSLYEERKRWAPVYLKEIFLAGIFSVQQSDDAVSFFFDGYLDEQTSLKEFLEKYDQTLQTKRQLEALADLDSKSCSFAAKSRSYFELQVSKLYSNEILRMFEREVEGMFSCFNSRQINVDGAVMTYIVEEQVEVEGNHRGARDYEVCYNEAEMEVFCICGMFNFRGYLCRHALFILSQNGIKEIPTQYIVSRWRKDMKRSNVYDHNSSGIDISNPVHRYDHLYRQIVKVVEEGKKSHDHYETALQAMENILRKLHIVNVEDPDNIMSKH 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00046 632 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 618 IPR031052 GO:0006355
Vium6436g00046 632 SMART 26again6 518 545 IPR006564 GO:0008270
Vium6436g00046 632 Pfam SWIM zinc finger 514 540 IPR007527 GO:0008270
Vium6436g00046 632 Pfam FAR1 DNA-binding domain 12 94 IPR004330 -
Vium6436g00046 632 ProSiteProfiles Zinc finger SWIM-type profile. 507 543 IPR007527 GO:0008270
Vium6436g00046 632 Pfam MULE transposase domain 219 313 IPR018289 -
Vium6436g00046 632 Coils Coil 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00046 Vium-Chr6436 277403 280640 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium6436g00046 MULE 2.6e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00046 - K17604 gmx:100796267 1096.26