Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00045 ATGGATAAAGTTTGTCTGAACAGTGATGCGGTAGGAGATGAAGAAGGCGAGAGCAATGTCCATGTCCATGTCCCTGTTGCTCCTGCGGTTGGGATGGAATTTGAGAGTTACGAGGATGTCTATTACTTCTATAATTGGTACGCCAAGGAACAGGGATTTGGGATTAGGGTTACAAATACCTGGTACCGCAAGACCAAGGAACGTTACAGAGCGAAACTTAGCTGCAGCAGCGCAGGCTTTAAGAAAAGAACGGAGGCTAATCGCCCCAGACCCGAAACCAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGATTCCACAAGATGGAGAATTATTGAAGTTGAGCTTGATCACAATCACTTGATTAACCCCACCAGTGGCAAGTTTTACAAGTCCCATAAGCAAGTTGCTCTTGGCAGCAAAAGAACCTTCCACTTTGATGCTACTGCTGCTCAACAGGTTCACAAAATTAGGATGTTTCGAACTCTCATAATCGATGCTGAGGATGATGCCAGTGTACATCCTGATGAAGGGAAATCTCCAAATCCGAAAGGCTTGTACTCCAACAATCAGTTGAAGCTGAAGAAAGGTGATGCTGAAGCAATTTTGAATTTTTTCAGTCACCAGCAATTGGCTGATCCAGACTTCTTCTATGTGGTCGATGTCAATGAGAGAGGGTGTTTCAGGAATTTGTTCTGGGCTGATGCAAAGTCCAGGGTTGCATACAGTTATTTCAGTGATGTTGTAGCTATTGACACTACATGTTTGAACGATGCATATGAAGTTCCCCTGGTTATGTTCCTTGGGATAAACCACCATAAACAATCCATCTTGTTTGGCTGTGGACTGCTTGCTTGTGAAACGGTTGAATCATACACTTGGCTGTTCAGGGCGTGGCTTACTTGTATCTTAGGACGCCCCCCACAAGTTATCATTACCAACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTCTTTCCAAGATCTACACACTGCCTTTGCTTGTTTAATATCATGCAAAAAGTTCCAGAAAAACTGGGAGCCTGCGTACAGTATGAAGCAATCAATGCAGCTTTGAGCAGAGCAGTATATTCCTCTCTCAGGGCTGAGGAATTTGAAGCAACTTGGGAGGATATGATGAAAAGCAGCGAAATTAGAGGCAATAAATGGCTCCAATCTTTGTATGAGGAACGGAAACGGTGGGCTCCAGTTTATCTGAAGGAAATCTTCTTGGCAGGAATATTTTCAGTTCAACAAAGTGATGATGCTGTATCATTTTTCTTTGATGGGTACCTCGATGAACAGACTTCTCTGAAAGAATTTTTAGAAAAATATGATCAGACTTTACAGACAAAGCGACAACTGGAAGCTTTGGCAGATTTGGATTCAAAATCTTGTAGCTTTGCAGCAAAATCGAGGTCTTACTTTGAATTGCAGGTTTCAAAGTTATATAGTAATGAAATATTAAGAATGTTTGAAAGGGAAGTGGAAGGAATGTTTTCTTGCTTTAACTCGAGACAGATAAATGTTGATGGAGCGGTGATGACGTACATTGTGGAAGAACAAGTTGAAGTTGAGGGAAATCATAGAGGTGCAAGAGATTATGAGGTGTGTTATAATGAAGCTGAAATGGAGGTCTTCTGCATCTGTGGCATGTTCAATTTCAGAGGTTACTTGTGCAGGCATGCTTTGTTTATTTTAAGCCAAAATGGGATAAAAGAGATCCCAACGCAGTACATTGTTTCACGGTGGAGAAAAGATATGAAGCGGAGCAATGTGTACGATCACAACTCTAGTGGCATTGATATAAGTAATCCAGTTCATAGGTATGATCATTTATACAGACAGATTGTGAAGGTTGTTGAGGAAGGTAAGAAATCTCATGATCATTACGAGACTGCACTACAAGCAATGGAAAATATATTGAGGAAGCTTCATATTGTAAACGTTGAGGATCCCGACAACATAATGTCCAAGCATTGA 1992 0.4147 MDKVCLNSDAVGDEEGESNVHVHVPVAPAVGMEFESYEDVYYFYNWYAKEQGFGIRVTNTWYRKTKERYRAKLSCSSAGFKKRTEANRPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLINPTSGKFYKSHKQVALGSKRTFHFDATAAQQVHKIRMFRTLIIDAEDDASVHPDEGKSPNPKGLYSNNQLKLKKGDAEAILNFFSHQQLADPDFFYVVDVNERGCFRNLFWADAKSRVAYSYFSDVVAIDTTCLNDAYEVPLVMFLGINHHKQSILFGCGLLACETVESYTWLFRAWLTCILGRPPQVIITNQCGILQTVVADVFPRSTHCLCLFNIMQKVPEKLGACVQYEAINAALSRAVYSSLRAEEFEATWEDMMKSSEIRGNKWLQSLYEERKRWAPVYLKEIFLAGIFSVQQSDDAVSFFFDGYLDEQTSLKEFLEKYDQTLQTKRQLEALADLDSKSCSFAAKSRSYFELQVSKLYSNEILRMFEREVEGMFSCFNSRQINVDGAVMTYIVEEQVEVEGNHRGARDYEVCYNEAEMEVFCICGMFNFRGYLCRHALFILSQNGIKEIPTQYIVSRWRKDMKRSNVYDHNSSGIDISNPVHRYDHLYRQIVKVVEEGKKSHDHYETALQAMENILRKLHIVNVEDPDNIMSKH 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00045 663 Coils Coil 441 461 - -
Vium6436g00045 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 649 IPR031052 GO:0006355
Vium6436g00045 663 Pfam MULE transposase domain 250 344 IPR018289 -
Vium6436g00045 663 SMART 26again6 549 576 IPR006564 GO:0008270
Vium6436g00045 663 Pfam SWIM zinc finger 545 571 IPR007527 GO:0008270
Vium6436g00045 663 Pfam FAR1 DNA-binding domain 43 125 IPR004330 -
Vium6436g00045 663 ProSiteProfiles Zinc finger SWIM-type profile. 538 574 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00045 Vium-Chr6436 277403 280640 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium6436g00045 MULE 2.8e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00045 - K17604 gmx:100796267 1121.3