Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00040 ATGAAGAAGACGAACGCTTTGTCGGTCTCAACCACACGCACTTACAGTTCTCTCTACTTCAATCCTCTGAACCACCCCAGCCACTGCCGAAGCTCCAGCACTGACTGTGTCAGAAAATCTCAGTTTGAATTTGAAGATGAACACCCCGACAAGGAAAACCACAATGTCAATGTCAACAAGCCCAAGCCTTTCAGGTCTCTCTCCACTGACAGAATCTTGAAGCCCTCCTCGCTTGAATTCTGCATGCAGATGAACCACTTTCAAACCTCCCTCAACATCTGGGACTACTCTGATTCTGAGTCTGCTCCTGCTTCCTCCTGGTCCACACTGCCCAACAAGTCCTTGATCTGTAGACCCTTGCCCTTAGATGTTGGAAGGTGCACATGTTTTATTCTCAAGGAGCAAACGCCACATGGACTGTCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAACAGGAAACTGGCCGTGGCCCACCACAAACGGCGGAATGGGAGGTCTTACTTCACCGTAGCTCAGAGTGTAAAAGGATTACTCTCCCATTCTGATGATACTTTTCTTGGCACAGTAACAGCTAACCTCATAGGCTCAAAATACTACATTTGGGATCAGGCGTATCGTCGTAATTCCGGCGGTAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCCACCATAACAACGTGTACAGGAAGTCACAGAAGCATGAGAGCATATGTACCCAAGCATCAATGCATGCCACTCAAGAACACAAACCAGGTACAGCATATAAAGGGATTGCCAATGAATTGGGACGGAAAGCTGGACAAAGTCCATCAACTGTTCTCAAAGGCCCCACTTTACAACAAGATTTCAAAACAATATGAGCTTGACTTCAGAGATAAAGGAAAGGCAGGACTCAAAATCCAAAGATCAGTTAAAAATTTCCAGCTAACTTTAGAGGAGAATGGGAGTCAGACGATACTGCAGCTGGGGAGGGCAGGAAAATCAAAATTCGTCATGGACTACAGGTACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGTTTAGCTTCCATGGATGCAAAGCTCTGTTGCACAGTGTAA 1110 0.4658 MKKTNALSVSTTRTYSSLYFNPLNHPSHCRSSSTDCVRKSQFEFEDEHPDKENHNVNVNKPKPFRSLSTDRILKPSSLEFCMQMNHFQTSLNIWDYSDSESAPASSWSTLPNKSLICRPLPLDVGRCTCFILKEQTPHGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSYFTVAQSVKGLLSHSDDTFLGTVTANLIGSKYYIWDQAYRRNSGGKQPKPPLAVVTYIPTITTCTGSHRSMRAYVPKHQCMPLKNTNQVQHIKGLPMNWDGKLDKVHQLFSKAPLYNKISKQYELDFRDKGKAGLKIQRSVKNFQLTLEENGSQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00040 369 Gene3D Tubby Protein; Chain A 108 368 IPR025659 -
Vium6436g00040 369 PANTHER TUBBY-RELATED 81 366 - -
Vium6436g00040 369 PRINTS Tubby superfamily signature 346 368 IPR000007 -
Vium6436g00040 369 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Vium6436g00040 369 PRINTS Tubby superfamily signature 325 344 IPR000007 -
Vium6436g00040 369 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Vium6436g00040 369 Pfam Tub family 118 362 IPR000007 -
Vium6436g00040 369 SUPERFAMILY Tubby C-terminal domain-like 104 368 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00040 Vium-Chr6436 237424 239872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00040 64 262 TUB Transcription Factor Family AT1G16070 56.164 1.33e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium6436g00040 Tub 2.3e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00040 K19600 - gmx:100803500 533.872