Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00039 ATGGCTGCCAAAACCTCACACAAAACCCTCTGCGTCGACTCTCCCATGCTCAAGAAGAAGCGCCCACGCAAAACCATTCCAAGAGACACTCCCTTGCCACGAACCTCACCCTACAGGGGTGTTACCAGGCATCGATGGACAGGTCGATTCGAGGCTCATCTCTGGGATAAAACTTCCTGGAATCAATCGCAGAACAAGAAAGGAAGACAAGTGTATCTGGGAGCATACGACGATGAAGATGCTGCGGCACGTGCTTACGATTTGGCAGCATTGAAGTATTGGGGTCCGGAAACCGTCCTCAATTTCCCTCTATCAAATTATGAAGAACAGCTTAAGGAGATGGAGGATCAATCTAAGGAAGAGTACATCGGATCCTTAAGAAGAAAAAGTAGCGGCTTCTCTCGGGGCGTCTCAAAATTCAGAGGCGTAGCAAGACACCATCATAATGGAAGATGGGAAGCACGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACATACGGTACAGAAGAAGAAGCAGCAGTGGCATACGATATGGCGGCCATAGAATACCGTGGACTTAATGCTGTTACCAACTTTGACCTCAGTCGTTATATGAAATGGCTACGTCCAAAAGACCAATCTCAACCTCAACTTCAAGCCCACGATGACAGCCCAAGCCCAATACCATCTGGACCTGAATCTCGAAATGCCACCTCAACATTGGGCCCTCCGCCGCCGCCGCCACCTTCTTCACCCTCCACCTCAAACCTTCCTCCTCGTCCTCCTCGCACATTCCCCGAAGATATTCAAACTTTGTTTGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGACCTTAATGCTTAA 915 0.4765 MAAKTSHKTLCVDSPMLKKKRPRKTIPRDTPLPRTSPYRGVTRHRWTGRFEAHLWDKTSWNQSQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGPETVLNFPLSNYEEQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAVAYDMAAIEYRGLNAVTNFDLSRYMKWLRPKDQSQPQLQAHDDSPSPIPSGPESRNATSTLGPPPPPPPSSPSTSNLPPRPPRTFPEDIQTLFETQDSAGIYTDTDDIIFGDLTSIASPIFHCDLNA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00039 304 Pfam AP2 domain 38 95 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 Pfam AP2 domain 138 189 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 SUPERFAMILY DNA-binding domain 36 105 IPR016177 GO:0003677
Vium6436g00039 304 FunFam AP2-like ethylene-responsive transcription factor 138 199 - -
Vium6436g00039 304 Coils Coil 104 124 - -
Vium6436g00039 304 MobiDBLite consensus disorder prediction 209 235 - -
Vium6436g00039 304 CDD AP2 138 199 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 Gene3D AP2/ERF domain 138 199 IPR036955 GO:0003700|GO:0006355
Vium6436g00039 304 Gene3D AP2/ERF domain 37 105 IPR036955 GO:0003700|GO:0006355
Vium6436g00039 304 MobiDBLite consensus disorder prediction 236 262 - -
Vium6436g00039 304 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 SUPERFAMILY DNA-binding domain 138 199 IPR016177 GO:0003677
Vium6436g00039 304 MobiDBLite consensus disorder prediction 209 263 - -
Vium6436g00039 304 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 244 - -
Vium6436g00039 304 FunFam AP2-like ethylene-responsive transcription factor 36 105 - -
Vium6436g00039 304 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Vium6436g00039 304 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00039 Vium-Chr6436 233824 237054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00039 127 203 AP2-EREBP Transcription Factor Family AT1G72570 38.824 1.03e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vium6436g00039 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00039 K09285 - gmx:100807781 390.193