Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00034 ATGCCTTCTGCCGAATCATTGCCACCTTCCTCCCAAACAATCTGTGTCACCGGCGCCGGTGGCTTCATCGCATCTTGGATGGTAAAACTTCTCTTGGAGAAAGGCTACACTGTGAGAGGAACACTCAGAAACCCAGATGATCCCAAGAACGGACACTTGAAAGAGTTTGAAGGAGCCTCCGACAGACTAACTCTGCATAAGGTTGACCTCCTTGACGTTGACTCCGTTAGATCAGTAATTCACGGCTGCCATGGTGTCTTTCACACAGCTTCTCCCGTCACCGATAACCCCGAAGAAATGGTGGAGCCAGCAGTGAATGGAGCGAAGAATATTATCATAGCAGCTGCAGAGGCAAAAGTACGACGTGTGGTGTTCACCTCATCGATTGGTGCCGTATACATGGATCCCAAAAGGAGCATCGATTTGGTGGTTGACGAGTCTTGTTGGAGTGATTTAGAGTATTGCAAGAACACTAAGAATTGGTACTGCTATGGGAAAGCTGTGGCTGAACAAGCAGCATGGGACACTGCCAAAGAGAAAGGAGTGGACTTGGTTGTAGTGAACCCTGTATTGGTTCTTGGACCATTACTACAACCAACCATCAATGCTAGCACGATTCACATCCTCAAGTACCTCACTGGCTCTGCCAAGACCTATGCAAATGCCACACAGGCTTATGTGCATGTGAAGGATGTGGCATTGGCCCACATACTTGTTTATGAAAAGCCTTCTGCTTCCGGTCGATACTTATGTGCTGAAAGCTCCCTGCACCGTGGAGAATTAGTTGAAATTCTGGCAAAGTATTTTCCTGAGTACCCAGTTCCCACCAAGTGTTCCGATGAAAAGAATCCCAGGGCAAAACCATACACCTTTTCAAACCAGAAGCTCAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTCTGTATGAAACGGTTAAGAGTCTGCAGGAGAAAGGGCACCTTCCTGTTCCTGCAAAGCAGGAAGATTCAACTACAGTGAAATCATGA 1014 0.4714 MPSAESLPPSSQTICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKEFEGASDRLTLHKVDLLDVDSVRSVIHGCHGVFHTASPVTDNPEEMVEPAVNGAKNIIIAAAEAKVRRVVFTSSIGAVYMDPKRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVKDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYTFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAKQEDSTTVKS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00034 337 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 - -
Vium6436g00034 337 CDD FR_SDR_e 15 301 - -
Vium6436g00034 337 Pfam NAD dependent epimerase/dehydratase family 14 245 IPR001509 -
Vium6436g00034 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 318 IPR036291 -
Vium6436g00034 337 FunFam Cinnamoyl-CoA reductase 1 5 336 - -
Vium6436g00034 337 Gene3D - 6 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00034 Vium-Chr6436 190129 192999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00034 11 277 Monolignol Biosynthesis Gene Families AT1G80820 73.783 1.73e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00034 K09753 - gmx:100789070 621.313