Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00033 ATGTCAGGTGAAGAGGTAGTTGTTGCAGCTGAGGCACCTGCTGCCATTCCCGGTGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCACGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTCTGCGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCCCTTTGCGCCGAGCACAACGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTATGTAAGATTGACTCAGAAGGAAAGGCCAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTTAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCACGTGAAAGCTAACTAA 423 0.4799 MSGEEVVVAAEAPAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00033 140 Gene3D - 6 140 IPR029064 -
Vium6436g00033 140 PANTHER 40S RIBOSOMAL PROTEIN S12 15 139 - -
Vium6436g00033 140 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vium6436g00033 140 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vium6436g00033 140 PRINTS Ribosomal protein S12E family signature 110 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vium6436g00033 140 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vium6436g00033 140 FunFam 40S ribosomal protein S12 7 140 - -
Vium6436g00033 140 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 119 IPR004038 -
Vium6436g00033 140 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vium6436g00033 140 SUPERFAMILY L30e-like 20 138 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00033 Vium-Chr6436 186491 188220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00033 16 140 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 2.35e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00033 K02951 - gmx:100500093 261.922