Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00032 ATGGACAATAACGAAGAAATCCCTTCAACACCTGCCACACCAGGCACTCCAGGTGCACCTCTCTTTGGAGGTTTCAATGCCACCAATAGGTCTAATAATGGTAACAAGAACTCTCTTCTCAAGAGTGGTAGATGTTTCATTGAGACCTTCATTCTCATGTTGGCCACCACTGCCGCCGTCATTGTCAACCAGAAGACAAACGGCTCCGAGACCCTCATAGGCTGTGCTGCCACCACTGGTCTCGCCGTTATGATCGTCATCCTTGCCACTGGCCATATCTCCGGTGCTCATCTCAACCCGGCTGTCACTCTTTCCTTTGCTGCATTGAAGCATTTTCCATGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCTATTTGTGCTGCATTTGCTCTAAAAGGGGTTTATCATCCTTTCATGAGTGGTGGAGTCACGGTTCCTTCCGGAGGATATGGCCAATCTTTTGCTTTGGAATTCATTATTGCTTTCAATCTCATGTTTGTTGTCACTGCAGTTGCCACCGACACTAGAGCTGTTGGAGAACTCGCGGGAATCGCGGTAGGAGCCACTGTCATGCTCAACATACTTATAGCAGGGCCAGTATCAGGCGGCTCAATGAACCCAGTAAGAACATTAGGTCCTGCTATTGCAGCAAACAACTACAAAGCTATATGGGTTTATCTGATAGCTCCCGTACTTGGAGCTCTAGCCGGTGCAGGTACTTACACTGCAGTGAAGCTGCCTGAAGAAGACGATGATGCCAAAGCAAAAGCTTCAATAAGCTTCAGAAGGTGA 804 0.4764 MDNNEEIPSTPATPGTPGAPLFGGFNATNRSNNGNKNSLLKSGRCFIETFILMLATTAAVIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQVLASICAAFALKGVYHPFMSGGVTVPSGGYGQSFALEFIIAFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAIAANNYKAIWVYLIAPVLGALAGAGTYTAVKLPEEDDDAKAKASISFRR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00032 267 SUPERFAMILY Aquaporin-like 46 254 IPR023271 -
Vium6436g00032 267 Pfam Major intrinsic protein 46 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium6436g00032 267 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Vium6436g00032 267 MobiDBLite consensus disorder prediction 1 27 - -
Vium6436g00032 267 Gene3D Glycerol uptake facilitator protein. 27 260 IPR023271 -
Vium6436g00032 267 FunFam Aquaporin NIP2-1 32 260 - -
Vium6436g00032 267 PANTHER AQUAPORIN NIP2-1 41 253 IPR034294 -
Vium6436g00032 267 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium6436g00032 267 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium6436g00032 267 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium6436g00032 267 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium6436g00032 267 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00032 Vium-Chr6436 175572 178549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00032 3 267 Major Intrinsic Protein MIP AT1G80760 66.667 8.56e-136 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00032 K09874 - gmx:100815637 432.18