Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00022 ATGGCAGATCTCAAGGAGAGGCTGCTACCACCAAAACCTGCTTCGGCTCTTAATGTAAGAGAGGTTGCCAATCGACCATCTGCCTCTGGAAGGCATGCTTTCCAAGGGGTGGATGTTCTGGGGTTAAAGAAGCGAGGCCAAGGTCTCCGATCATGGATTCGTGTTGACACATCTGGAAACTCTCAAGCCATTGAAGTAGACAAGTTTACCATGATGCGACGTTGTGATCTACCTGCTCGTGATCTTCGCCTACTTGATCCCTTGTTTGTCTACCCATCAACAATCCTTGGCAGGGAAAAAGCTATTGTTGTAAATCTGGAGCAGATACGGTGTATCATTACAGCAGATGAAGTTCTTCTCTTGAATTCCCTTGATAGTTATGTATTGCACTATGTAATGGAGCTACAACGACGGTTGACAGCAACTGGGGTAGGGGAGGTTTGGCCATCAGAGGGTTCTGACATGAACCGAAGGAGGGGAAGTAGGAATTTTGATAATGTATTTAGCAACTCTTCCCCCGATTATTTACCTTTCGAGTTCAGGGCCCTTGAAGTAGCCCTGGAGGCGGCATGCACATTTCTTGATTCTCAGGCAGCAGAGTTAGAAATTGAAGCTTATCCCTTGTTGGATGAACTGACATCAAAGATCAGTACTTTAAATTTGGAACGTGTTCGTCGATTAAAAAGCAGACTTGTTGCGTTGACCAGGAGGGTTCAGAAGGTTAGAGATGAAATAGAGCAGCTTATGGACGATGATGGTGACATGGCTGAAATGTATCTTACTGAGAAGAAAAGACGAATGGAGTTGTCATTTTACGGAGATCAGTCTATGGTTGGATATAAATCAGTTGATGGTGCATCCATTTCTGCCCCGGTTTCTCCTGTGTCATCACCTCCTGATTCTCGAAAGCTAGAAAAGAGCTTCAGTATTGCTAGAAGTCGACATGAGAGCATGCGAAGTTCTGAAAGTACTACGGAAAGTATAGAGGAACTTGAGATGTTGCTGGAAGCATACTTTGTTGTCATTGACAGCACTCTAAACAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATAAACATCCAACTGGATAATGTTCGGAATCAGCTTATCCAGTTTGAGCTTTTACTCACAACTGCAACATTTGTGGTTGCCATCTTTGGAGTGGTAGCGGGAATATTTGGGATGAATTTTGAAATTGCATTATTCAATGTCCCCTCTGCTTTCCAGTGGGTCCTTATAATAACAGGAATTTGTGGAGTATTTATATTTTCTGCATTCGTGTGGTTCTTCAAGTACAGAAGACTCATGCCCCTATAG 1332 0.4317 MADLKERLLPPKPASALNVREVANRPSASGRHAFQGVDVLGLKKRGQGLRSWIRVDTSGNSQAIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLHYVMELQRRLTATGVGEVWPSEGSDMNRRRGSRNFDNVFSNSSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMVGYKSVDGASISAPVSPVSSPPDSRKLEKSFSIARSRHESMRSSESTTESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIALFNVPSAFQWVLIITGICGVFIFSAFVWFFKYRRLMPL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00022 443 Gene3D Magnesium transport protein CorA, transmembrane region 129 374 - -
Vium6436g00022 443 FunFam Magnesium transporter MRS2-1 381 441 - -
Vium6436g00022 443 FunFam Magnesium transporter MRS2-1 40 123 - -
Vium6436g00022 443 CDD Mrs2_Mfm1p-like 52 440 IPR039204 -
Vium6436g00022 443 Gene3D - 40 123 - -
Vium6436g00022 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Vium6436g00022 443 Coils Coil 224 251 - -
Vium6436g00022 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 380 433 IPR045863 -
Vium6436g00022 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 23 441 IPR039204 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00022 Vium-Chr6436 115302 124918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00022 1 443 MRS2 Gene Family AT1G16010 85.811 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00022 K16075 - gmx:100779803 778.859