Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00020 ATGGATCGCGGATCCAATGGCACGGGTGGCAGCAGGAACATCCTGTTCAACAAGTACGAGATAGGGAAGCTGCTGGGGCAGGGGAACTTCGCCAAAGTGTACCACGGGAGAAACCTCAGCACAAACGACAGCGTGGCCATCAAGGTCATCAAAAAAGAGAAGCTTCAGAAGGATAAGCTGGTGAAACAGATAAAGCGCGAGGTCTCCGTCATGCGCTTGGTGCGTCACCCCCACATCGTGGAACTCAGAGAGGTTATGGCCAACAAAGCCAAGATCTTCTTGGTCGTCGATTACGTCAAGGGAGGAGAACTCTTCGCCAAGGTGGCCAAGGGAAAGATGAAGGAAGAAATCGCCCGGAAGTACTTTCAACAGCTGATCAGCGCCGTCGACTTCTGCCACAGTCGTGGCGTCACCCACCGTGATTTGAAGCCGGAGAATCTGCTCCTCGACGAGAACGAAGACCTGAAAGTGTCAGACTTCGGCTTGTCTGCGCTGCCTGACCAGCGCAGATCTGACGGGATGCTCGTGACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTGAAGAAGAAGGGCTACGATGGGTCGAAGGCAGATATATGGTCGTGTGGGGTGATCCTCTTCGCGCTTCTTTCTGGGTATTTGCCCTTTCAGGGTGAGAATGTGATGAGGATTTACAGCAAGTCTTTCAAAGCCGACTATGCATTCCCGGAATGGATTTCGCCCGGGGCGAGACGTTTGATCTCTAATTTACTGGTCGTGGACCCAGAAAAGAGGTATTCCATGTCTGACATCATGAAGGATCCTTGGTTCCAAGTTGGGTTCATGCGCCCCATTGCGTTTTCCATGAAGGAGACGGCCGTGGAGATTAACATCGACTTCAACGGGGACGAATCCGGTGGCAGTGGAAACGTTAGCGGCAGCGAAGACGGTAACGGCAGCAGCAACAACCATTCTGGGGAACTGGTCGGGGCCAAGCCGGCTCGTCCGTCTTACAATGCTTTCGAGATAATATCCTCGCTGTCGCACGGGTTCGATCTGAGTAATCTGTTCGAGACGAGGAAGCGGTCGCCGTCGATGTTCATATCGAAGCACTCGGCGTCGTCGGTGATGGCGAAGCTGGAGGCGGTGGCGAAGAAGCTGAACTTTAGGGTGACGGGGAAGAAGCAGTTCACGGTGAGAATGCAGGGGGCGACGGAAGGGAGGAAAGGGAAGCTGGGGATGACAGTGGAGGTGTTCGAGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTTTCGAAGTCTGCCGGAGACACGCTTGAATACATAAAGCTATGCGAGGAAGAAGTGAGGCCTTCGCTGAAAGACATCGTGTGGAGTTGGCAAGGGGACAGCAATTCCCGCCAGTGA 1392 0.5503 MDRGSNGTGGSRNILFNKYEIGKLLGQGNFAKVYHGRNLSTNDSVAIKVIKKEKLQKDKLVKQIKREVSVMRLVRHPHIVELREVMANKAKIFLVVDYVKGGELFAKVAKGKMKEEIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYAFPEWISPGARRLISNLLVVDPEKRYSMSDIMKDPWFQVGFMRPIAFSMKETAVEINIDFNGDESGGSGNVSGSEDGNGSSNNHSGELVGAKPARPSYNAFEIISSLSHGFDLSNLFETRKRSPSMFISKHSASSVMAKLEAVAKKLNFRVTGKKQFTVRMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYIKLCEEEVRPSLKDIVWSWQGDSNSRQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00020 463 FunFam Non-specific serine/threonine protein kinase 12 314 - -
Vium6436g00020 463 Pfam NAF domain 333 388 IPR004041 GO:0007165
Vium6436g00020 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 449 - -
Vium6436g00020 463 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00020 463 Gene3D Transferase(Phosphotransferase) domain 1 11 308 - -
Vium6436g00020 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vium6436g00020 463 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Vium6436g00020 463 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00020 463 FunFam Non-specific serine/threonine protein kinase 330 453 - -
Vium6436g00020 463 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00020 463 ProSiteProfiles NAF domain profile. 329 354 IPR018451 GO:0007165
Vium6436g00020 463 MobiDBLite consensus disorder prediction 301 325 - -
Vium6436g00020 463 FunFam Non-specific serine/threonine protein kinase 11 98 - -
Vium6436g00020 463 CDD CIPK_C 335 449 - -
Vium6436g00020 463 MobiDBLite consensus disorder prediction 301 323 - -
Vium6436g00020 463 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Vium6436g00020 463 Gene3D Kinase associated domain 1, KA1 330 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00020 Vium-Chr6436 101674 103782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00020 12 461 CBL-interacting serine-threonine protein kinases AT5G10930 59.735 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6436g00020 Pkinase 3.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00020 - - gmx:100804244 756.133