Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00019 ATGGATTATTCATCACGGATTAACACTTCATTGGATCTCAATATCAATCCTCACAGGCTGCACGAAGAACTTCCCAAAAAGGAGGTGGAACACAATTTTTTCTCTTTGGGGGTGAAGAAATCCTCTGTAAAAGAACAGCAGTCTTCCAGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTGACGGAGATGTGTGAGAACTATAACGCCATGCGAAGCAATTTGATGGAATATATGAGGAAGAATCCTGACAAGGAGCAAAGCTCATCGAAGAAAAGGAAGTCAGAAAGCAGCTTCAATAATAGTGCTCCGAAGAGCATGAACGGAAACTCCGAGAGCAGCTCAACCGACGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGACACCAGTTTCAAAAGTTTACGTGAGGACAGAAGCATCTGATACAAGCCTGATTGTGAAAGATGGATATCAATGGAGGAAATACGGACAAAAGGTTACCAGGGATAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCTTTCGCTCCGAGCTGCCCGGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACGTATGAAGGAGAGCACAATCATCCTCACCCTTCTCAAATGGAGCCAACCGCAGGCTCCAACCGTGGTGTGACCCCATGTTCAGGGTCTCTCAGCTCTTCCGCACCAACAGTAACCCTTGACTGGACGAAATCCAAGTCCAGCACCGATTCCAAGAACATAACTCCCAAAATGGAGGCACCACAAATCCCTCAGGTTTTGGTAGAACAGATGGCCACTTCCCTCACCAAGGATCCTAATTTCAGAGCAGCACTGGTTGCCGCAATCTCAGGAAAAATGTTGCACAATAATTGA 915 0.4601 MDYSSRINTSLDLNINPHRLHEELPKKEVEHNFFSLGVKKSSVKEQQSSSALVEELKRVSAENKKLTEMLTEMCENYNAMRSNLMEYMRKNPDKEQSSSKKRKSESSFNNSAPKSMNGNSESSSTDEESCKKPKEDIKTPVSKVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEPTAGSNRGVTPCSGSLSSSAPTVTLDWTKSKSSTDSKNITPKMEAPQIPQVLVEQMATSLTKDPNFRAALVAAISGKMLHNN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00019 304 FunFam WRKY transcription factor 40 142 219 - -
Vium6436g00019 304 MobiDBLite consensus disorder prediction 220 243 - -
Vium6436g00019 304 Pfam WRKY DNA -binding domain 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6436g00019 304 Gene3D WRKY domain 141 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6436g00019 304 MobiDBLite consensus disorder prediction 212 243 - -
Vium6436g00019 304 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6436g00019 304 MobiDBLite consensus disorder prediction 103 124 - -
Vium6436g00019 304 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 15 300 IPR044810 GO:0003700
Vium6436g00019 304 MobiDBLite consensus disorder prediction 91 136 - -
Vium6436g00019 304 Coils Coil 49 76 - -
Vium6436g00019 304 SUPERFAMILY WRKY DNA-binding domain 154 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6436g00019 304 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00019 Vium-Chr6436 90950 92922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00019 4 304 WRKY Transcription Factor Family AT1G80840 53.943 6.80e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6436g00019 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00019 - - gsj:114388658 488.804