LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6436g00016	ATGTGGAGTTCCACTTCAAGCATAGCGATTGCAGCACCCTCCTCCGACGAGGATCCCAGCCAGTCCTCTTCGTCTTCCTTCTCCACTTCTCTCTTCAACTTCTCTTCTGGAAATCCTACAATCGAAGAGACCCGTGGCCTCATGCATCTATTCCCCGACGACGTTCCTGCTACTCTTCCGGTTGGACGCAAGCCTCTTGTTTGCGTTGTCGGCGTCCCCAATCACATGACCTATGCGGATTTCTGTCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAGAGATGCGTATTGTTAGGATGGACGGTATGGAGGATCAGTACAGTGTCTTGATTCGCTTTGACCACCAAGACTCCACCGACAGCTTCTTCAAGCACTACAATGGCCGCCGATTCTCCTCTCTTGAGGTCGAGGTTTGCCGAGTTCTTTTCACGTTAGACGTGCAGTACACTGGTTCCATTGAACATGCGCAACCCTCAAATGCCAGCTCAACTGAACAGCCAACTTGTCCTGTTTGTCTTGAGCGATTAGATCAAGACACCAGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCCGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGATTTGTTTTGTCTGTCAAACCACTGAGAACCTGTGGATATGCGTTATATGTGGACATGTTGGCTGCGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACGCAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCACAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACGCTCACTGTGCACACGCAGATAATGGATGTGGAAGTTGCAGCTGTGAAGACAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAAATTTATTTTGAATCCTTATTAGAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTACAAAGCTGTTCAGAAGGCTGTCAATCTTAAACAACAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAGCAAAGATAGTTGAGATTGAAGAGAGGGAGAGAAAAGCTACTAGAATGATGGAGGATAGAGTAGCGGAGCTGGAAAAGCAGCTTGGAGATCTCATGGTTTGTCTTGAGGGGGGGAAGATGGCAGAAGAGCTACCCGTTTCAGATGATGAGATTAAAGAAGGGGCTGTATTTCAAAAATCAAAGGATTCATCCTCAATTAGTGCTTCTCAGCAGCAGGAAGGAGAATACAGGCATGCATAA	1449	0.4403	MWSSTSSIAIAAPSSDEDPSQSSSSSFSTSLFNFSSGNPTIEETRGLMHLFPDDVPATLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDHQDSTDSFFKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGHVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKIYFESLLEEVKEESERKIYKAVQKAVNLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKAKIVEIEERERKATRMMEDRVAELEKQLGDLMVCLEGGKMAEELPVSDDEIKEGAVFQKSKDSSSISASQQQEGEYRHA	482

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6436g00016	482	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	211	291	IPR013083	-
	Vium6436g00016	482	ProSiteProfiles	Zinc finger UBP-type profile.	203	296	IPR001607	GO:0008270
	Vium6436g00016	482	MobiDBLite	consensus disorder prediction	461	476	-	-
	Vium6436g00016	482	CDD	RRM_BRAP2_like	67	148	-	-
	Vium6436g00016	482	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	150	210	IPR013083	-
	Vium6436g00016	482	ProSiteProfiles	Zinc finger RING-type profile.	169	209	IPR001841	-
	Vium6436g00016	482	CDD	RING-H2_BRAP2	167	210	IPR047243	-
	Vium6436g00016	482	PANTHER	BRCA1-ASSOCIATED PROTEIN	12	473	-	-
	Vium6436g00016	482	MobiDBLite	consensus disorder prediction	459	482	-	-
	Vium6436g00016	482	Coils	Coil	378	398	-	-
	Vium6436g00016	482	SMART	ring_2	169	208	IPR001841	-
	Vium6436g00016	482	Coils	Coil	410	430	-	-
	Vium6436g00016	482	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vium6436g00016	482	Pfam	BRCA1-associated protein 2	60	156	IPR011422	-
	Vium6436g00016	482	SMART	Zf_UBP_1	219	268	IPR001607	GO:0008270
	Vium6436g00016	482	SUPERFAMILY	RING/U-box	185	284	-	-
	Vium6436g00016	482	Pfam	Ring finger domain	168	209	IPR001841	-
	Vium6436g00016	482	Pfam	Zn-finger in ubiquitin-hydrolases and other protein	220	279	IPR001607	GO:0008270
	Vium6436g00016	482	Coils	Coil	334	372	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6436g00016	Vium-Chr6436	74167	77320	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6436g00016	165	209	C3H Transcription Factor Family	AT1G72220	48.936	1.77e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6436g00016	K10632		-	gmx:100794688	826.239