Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00015 ATGGAGGAAAACCACTGGGGGAAGTTGTCTTCCCATATGGAAATGGAGGATGAGGTGTTGAATGAATGTTTGTGCCAGACGAAGACCTTTGATGAAGAGTTTTTACGAGATATTCTGCAGCAGCCGCAAGAGGGTGCAGCTCCAGATCTTAATACTTTCGGTGAGACAAGCTGTGTGATAAGGGCAGGTGGTGGTGATAAGTTGATGATGAAGAACAGCAACTCATCCATGATGAATAATCTTTGTGGTGAAAATAAGAACAAGGCAACCGCATCTCCAACCACCTATGTACTGTCTTTTGACAAATCCGATGATCCTCATTCTGTGTCTGCTTGGAAAGATGTCTCCCACAAGTTGCCTTTGTCCTCGACAAGGACCAACCAGGGAACCAAGAAGATTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCAGAGAGAAAGAGGAGACAGGAACTCACCAGAAAATTCATAGCACTTGCTTCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCACATGTACTAAGAGAAGCAATAAATTACGTGAAGCAACTGAAAGAACGTGTAGAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGCAGAATCATCGATCACCATAACAAGATCTCATCTATGTATTGATGACACAAACAGTGACGAATGGTATGGGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAGTGTTGATCAAAATTCATTGTGGAAAACAAAAGGGTATTCTGCTCAAAATATTGTCTCAGCTTGAACGTCTTCATCTCTTGATATCCACTAGCAATGTCTTGCCACTTGGAAGTACCATTGACATCACCATCATTGCTCAGATGGGTGATGAATACAAGATGGTGGTGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCATGTGTGTCACAGTGA 954 0.4308 MEENHWGKLSSHMEMEDEVLNECLCQTKTFDEEFLRDILQQPQEGAAPDLNTFGETSCVIRAGGGDKLMMKNSNSSMMNNLCGENKNKATASPTTYVLSFDKSDDPHSVSAWKDVSHKLPLSSTRTNQGTKKIRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKMDKAHVLREAINYVKQLKERVEVLEEDIQKNGAESSITITRSHLCIDDTNSDEWYGSNEAVPAEVEARVLGKQVLIKIHCGKQKGILLKILSQLERLHLLISTSNVLPLGSTIDITIIAQMGDEYKMVVKDLVKELRQVAMMKSCVSQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00015 317 PANTHER BHLH TRANSCRIPTION FACTOR 56 310 - -
Vium6436g00015 317 SMART finulus 143 192 IPR011598 GO:0046983
Vium6436g00015 317 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983
Vium6436g00015 317 Coils Coil 176 203 - -
Vium6436g00015 317 Gene3D - 128 202 IPR036638 GO:0046983
Vium6436g00015 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Vium6436g00015 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Vium6436g00015 317 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00015 Vium-Chr6436 71039 73571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00015 128 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.277 2.02e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6436g00015 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00015 - - vum:124843254 617.076