Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00014 ATGGACGATGACAGGCATGGGGATCTGATGTTAGAAGAGTGCCACACACAAGAGGAGGACTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTGAAACTGAAACTCACCACCACAACTTCACAACCCCCACAGATGCTGAGACGCTAACGATGGTAGGTTCAAACTCCAAAACCTCTTCTTCTCCCAGAACATATATTCTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTGCTTCCACTCTCTCCGCCAAAAAGCGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAAGTCCACAACCCAAACCGGAAAGAGGACCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAGAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATCCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGCGATGTGTGTGAGTCAAGTGAAGGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATCGAGATCCATTGTGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACTGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTGAGCGATGTGGTGAAAAATCTGAGGAAAGTGTTCATGAATCACATGAACATCAATGGCGATCCGTACTAG 894 0.4754 MDDDRHGDLMLEECHTQEEDFLREILGEPGFSSETETHHHNFTTPTDAETLTMVGSNSKTSSSPRTYILSFDSSTIIPATPQPPSASTLSAKKRHQNLNPEQPKPKSTTQTGKRTRNGSVDHIMAERRRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVTELEERNKRGKESVMILKKSDVCESSEGDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVSDVVKNLRKVFMNHMNINGDPY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00014 297 Gene3D - 107 183 IPR036638 GO:0046983
Vium6436g00014 297 MobiDBLite consensus disorder prediction 75 117 - -
Vium6436g00014 297 SMART finulus 123 172 IPR011598 GO:0046983
Vium6436g00014 297 Coils Coil 156 183 - -
Vium6436g00014 297 PANTHER BHLH TRANSCRIPTION FACTOR 32 289 - -
Vium6436g00014 297 MobiDBLite consensus disorder prediction 75 125 - -
Vium6436g00014 297 Pfam Helix-loop-helix DNA-binding domain 122 166 IPR011598 GO:0046983
Vium6436g00014 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vium6436g00014 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00014 Vium-Chr6436 59268 61571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00014 95 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.062 3.02e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6436g00014 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00014 - - pvu:PHAVU_005G181300g 423.32