Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00011 ATGGAGCAAGCATGGCAGAATTGCTCTCTTCAAATGGAAATGGACGATGACAGGCATGGGGATCTGATGTTAGAAGAGTGCCACACACAAGAGGAGAACTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTGAAACTGAAACTCACCACCACAACTTCACAACCCCCACAGATGCTGAGACGCTAACGATGGTAGGTTCAAACTCCAAAACCTCTTCTTCTCCCAGAACATATATTCTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTGCTTCCACTCTCTCCGCCAAAAAGCGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAAGTCCACAACCCAAACCGGAAAGAGGACCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAGAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATCCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGCGATGTGTGTGAGTCAAGTGAAGGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATCGAGATCCATTGTGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACTGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTGAGCGATGTGGTGAAAAATCTGAGGAAAGTGTTCATGAATCACATGAACATCAATGGCGATCCGTACTAG 933 0.4727 MEQAWQNCSLQMEMDDDRHGDLMLEECHTQEENFLREILGEPGFSSETETHHHNFTTPTDAETLTMVGSNSKTSSSPRTYILSFDSSTIIPATPQPPSASTLSAKKRHQNLNPEQPKPKSTTQTGKRTRNGSVDHIMAERRRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVTELEERNKRGKESVMILKKSDVCESSEGDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVSDVVKNLRKVFMNHMNINGDPY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00011 310 PANTHER BHLH TRANSCRIPTION FACTOR 14 302 - -
Vium6436g00011 310 Coils Coil 169 196 - -
Vium6436g00011 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 199 IPR036638 GO:0046983
Vium6436g00011 310 Gene3D - 120 196 IPR036638 GO:0046983
Vium6436g00011 310 SMART finulus 136 185 IPR011598 GO:0046983
Vium6436g00011 310 Pfam Helix-loop-helix DNA-binding domain 135 179 IPR011598 GO:0046983
Vium6436g00011 310 MobiDBLite consensus disorder prediction 88 137 - -
Vium6436g00011 310 MobiDBLite consensus disorder prediction 88 130 - -
Vium6436g00011 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00011 Vium-Chr6436 59260 65595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00011 108 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.062 3.35e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6436g00011 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00011 - - pvu:PHAVU_005G181300g 444.506