Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00008 ATGAATCTTCTTGTTCTCTTCCTACCTATTTGGGTGCTTAGCATTTCTCTTTCCTTGCCAATTCTTCATGCTGCATCTTTCATTTCTGTTTCTCAAAATGCACAAGCTGAGTCTCCAGGTATTCATGAGGTCAGAGCAGTGCACCATCAGAATTTGAATAAGAGAATTCTAATTGCATTAGTTGCTTGTTCTGGTCTTGTTGGTGGAGTCTTCCTAATCATAGTTTATGTCTGGTTCCGTCGACATAAAACCTCAAAACTCTCCAGAAGTAAAAGCCAAGAAACCACCGAGGCTGCAAAAGGGGAGACTTTAAGCTCGGTTAATGCAAAACTTAATTACTCAAGGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTGGAGGCTGCCACGAACAGCTTTAGCACAAGCAGTATTATGAGAAAGAGTGGTTCTAGAATCATTTACAGAGCTAACTTTGATGAGCATTTCCAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGCCATCAGAATATCATAAAACTTATGGGTTATTGTGTTCATGGTCAATCGAGGTTTCTTGTTTATGAATTGGTGGAGAACGGGTCTCTGGAAACTCAATTGCATGGGCCTAATCGAGGGTCATCTTTAACCTGGTATCTAAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCATGAACACTCCAATCCTCCTGTGGTTCATCGAGACTTACAATCTTCTAATGTTCTTCTGGACTCTAACTTTAATGCGAAGTTATCAGATTTTGGATTTGCTATGGTTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATACGTGGCCCCTGAGTACATATCACATGGTAAACTAACTGACAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTTCTAGAACTCCTAACCGGAAGAAAGCCCATGGAGAACATGACCTCAAACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTTGAAGCACTTGTATCAGGTTGCTGCAGTTGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTCATAACAGACGTGCTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCATTAAGAGTTACAGAACCCATCAGCTCAGAGAACTCTCATTGA 1287 0.4196 MNLLVLFLPIWVLSISLSLPILHAASFISVSQNAQAESPGIHEVRAVHHQNLNKRILIALVACSGLVGGVFLIIVYVWFRRHKTSKLSRSKSQETTEAAKGETLSSVNAKLNYSRMADKKSSVAIFDYQLLEAATNSFSTSSIMRKSGSRIIYRANFDEHFQAAVKKADSDADREFENEVSWLSKMRHQNIIKLMGYCVHGQSRFLVYELVENGSLETQLHGPNRGSSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLQSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMTSNQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSENSH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00008 428 PANTHER OS01G0750732 PROTEIN 37 408 - -
Vium6436g00008 428 ProSiteProfiles Protein kinase domain profile. 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00008 428 Gene3D Transferase(Phosphotransferase) domain 1 211 409 - -
Vium6436g00008 428 SUPERFAMILY Protein kinase-like (PK-like) 114 404 IPR011009 -
Vium6436g00008 428 FunFam probable receptor-like protein kinase At1g80640 211 409 - -
Vium6436g00008 428 Pfam Protein tyrosine and serine/threonine kinase 158 361 IPR001245 GO:0004672|GO:0006468
Vium6436g00008 428 Gene3D Phosphorylase Kinase; domain 1 96 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00008 Vium-Chr6436 38167 42369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00008 1 350 Receptor kinase-like Gene Family AT1G80640 46.070 5.72e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vium6436g00008 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00008 - - gmx:100811188 759.214