Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00005 ATGCCATTTCCACGCCGGATTTCGGCAAGGAATCCAAAGACCACGCTTCTACATATTGTCCATCGTGGTGGGTATGTTGAGCTCCATGACAGACCAGTGACTGCAGCTGAGATTATGTGCCGCTATCCAAGATGTTGTGTAACATATCCAAATGTGTTCCAGCAACCATGGGCAGTTGTTGAACCAGATGCAAAGCTTGTGCTTGGACAAAAGTACTATGTAGTACCATTGAGCACAATAAGAAAACTTCAAGGGCTATCTCCAAGGAGCTCTCCTTCTCCTGCTCATGAAATTGCAACCAGTTCTTCAGTTTATGAGATTAGAAACACACAATCCAGCAAAGAGGAAAAAGATGATGGTATGCTTTCCACTTGTTGTGTCTTCATGAATAAAAGCACTGCAAAGAAAACAAATAACTACAAACATTCCAAAAATAAGAACCATGTTAGGAATTTGAGTACAAATGTTNAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGCCATCAGAATATCATAAAACTTATGGGTTATTGTGTTCATGGTCAATCGAGGTTTCTTGTTTATGAATTGGTGGAGAACGGGTCTCTGGAAACTCAATTGCATGGGCCTAATCGAGGGTCATCTTTAACCTGGTATCTAAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCATGAACACTCCAATCCTCCTGTGGTTCATCGAGACTTACAATCTTCTAATGTTCTTCTGGACTCTAACTTTAATGCGAAGTTATCAGATTTTGGATTTGCTATGGTTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATACGTGGCCCCTGAGTACATATCACATGGTAAACTAACTGACAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTTCTAGAACTCCTAACCGGAAGAAAGCCCATGGAGAACATGACCTCAAACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTTGAAGCACTTGTATCAGGTTGCTGCAGTTGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTCATAACAGACGTGCTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCATTAAGAGTTACAGAACCCATCAGCTCAGAGAACTCTCATTGA 1257 0.4208 MPFPRRISARNPKTTLLHIVHRGGYVELHDRPVTAAEIMCRYPRCCVTYPNVFQQPWAVVEPDAKLVLGQKYYVVPLSTIRKLQGLSPRSSPSPAHEIATSSSVYEIRNTQSSKEEKDDGMLSTCCVFMNKSTAKKTNNYKHSKNKNHVRNLSTNVXADSDADREFENEVSWLSKMRHQNIIKLMGYCVHGQSRFLVYELVENGSLETQLHGPNRGSSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLQSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMTSNQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSENSH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00005 418 PANTHER OS01G0750732 PROTEIN 157 398 - -
Vium6436g00005 418 MobiDBLite consensus disorder prediction 85 109 - -
Vium6436g00005 418 FunFam probable receptor-like protein kinase At1g80640 201 399 - -
Vium6436g00005 418 ProSiteProfiles Protein kinase domain profile. 90 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6436g00005 418 Pfam Protein tyrosine and serine/threonine kinase 142 351 IPR001245 GO:0004672|GO:0006468
Vium6436g00005 418 SUPERFAMILY Protein kinase-like (PK-like) 160 394 IPR011009 -
Vium6436g00005 418 Pfam PADRE domain 13 152 IPR025322 -
Vium6436g00005 418 Gene3D Transferase(Phosphotransferase) domain 1 201 399 - -
Vium6436g00005 418 MobiDBLite consensus disorder prediction 85 113 - -
Vium6436g00005 418 Gene3D Phosphorylase Kinase; domain 1 127 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00005 Vium-Chr6436 33869 36821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00005 158 398 Receptor kinase-like Gene Family AT3G58690 51.210 6.37e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vium6436g00005 PK_Tyr_Ser-Thr 7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00005 - - gmx:100811188 493.812