Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00002 ATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACCAGAATATGGCTGGGAACGTTTGAAACAGCGGAAGATGCTGCCAGAGCGTACGATGAAGCGGCAAGGTTAATGTGCGGGCCAAAAGCACGCACCAATTTCGCTTACAATCCTAACGACCCACAATCTTCTTCATCGAAGCTACTTTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCGCTTCAAATGAGCAAGCAGAAGGGATCGCAGAAAGAGGCTGAAGAAGGGTCATCCAATTCAGGCAATGCCGTTGCGGGAACGAGCGCGGACACAACAGGGTTCAGATGGGCAGAGAAGAGACAGAAGGAAGTTCAGTGGGTAGAAGAATACCATGTTGAAGTGGGAGAAGCAGAACAGCAACAGTTTCATCCAGTTCTTGAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTGATTATGGGTCAATGGAGTTTAGTTGTGTGGACTCAGTCTAA 564 0.4911 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPNDPQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKGSQKEAEEGSSNSGNAVAGTSADTTGFRWAEKRQKEVQWVEEYHVEVGEAEQQQFHPVLEDDHIEQMIQELLDYGSMEFSCVDSV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00002 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vium6436g00002 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vium6436g00002 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vium6436g00002 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vium6436g00002 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vium6436g00002 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vium6436g00002 187 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vium6436g00002 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 123 - -
Vium6436g00002 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vium6436g00002 187 MobiDBLite consensus disorder prediction 97 126 - -
Vium6436g00002 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vium6436g00002 187 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00002 Vium-Chr6436 9607 10892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00002 1 184 AP2-EREBP Transcription Factor Family AT5G25190 62.500 1.84e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6436g00002 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00002 - - gsj:114375612 285.419