Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00001 ATGGAGCTTGTGTGGTCAGGGCCACATCCATCATCTGAAAATGATCTGAAAACTCCATTTTCAGAGAATCCTCCACCTTGCTCAAAGCCAGTGCTAGCTTCCATGGATATCCAAAAGGAGAAGAAGGAGGACCAAGAACATCCCTATGAGTCAAAGCCAGAACTCAACCTCATAAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCATGTCATGGAGGAGGACACGGCGATGAATTGGAGCCAAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCCCTTGGGGGACATCAGAATGCGCATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAGAGCTGGTGCTGCAGCTCCAACAGATTTTGCACACAGGTATTCCAGCATGGCTTCTCTGCCTCTGCATGGCTCCTATAACAGGTCACTTGGAATTCAGGCACATTCCATGATCAACAAACGCTGTTTTCAAACACAAACACCTTGTTTTGGTTTGTCCCATTGTCATGCTCAAAACTGGTGGCAGAAGCAGCCTTTGTACTCACAAGAACAGGCAACAGGGACAGAATCTGAATCAACCTTGGCTGGTGGCATCCAACGGCTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGCTACTGGTTGGACAGTGTTCACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 744 0.4651 MELVWSGPHPSSENDLKTPFSENPPPCSKPVLASMDIQKEKKEDQEHPYESKPELNLINCIDTNLSMNSSESCHGGGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRAGAAAPTDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKRCFQTQTPCFGLSHCHAQNWWQKQPLYSQEQATGTESESTLAGGIQRLGKFSPRLVPEGFGGYWLDSVHHLKTKQEELHKLDLSLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00001 247 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vium6436g00001 247 MobiDBLite consensus disorder prediction 35 51 - -
Vium6436g00001 247 Gene3D Classic Zinc Finger 67 134 - -
Vium6436g00001 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 247 IPR044246 GO:0009788
Vium6436g00001 247 FunFam Zinc finger protein 2 64 133 - -
Vium6436g00001 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vium6436g00001 247 MobiDBLite consensus disorder prediction 1 51 - -
Vium6436g00001 247 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00001 Vium-Chr6436 1167 2967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00001 54 247 C2H2 Transcription Factor Family AT5G10970 43.192 1.53e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6436g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00001 - - vun:114185863 453.366