Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6433g00002 ATGGCTACTTTAGAATCTGCCCTCACCTTGTTCGCACCTCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAACTTCATACTTCCACTTCCCTTTTCTTCTCTTCCAAGGCCTCTTTCAAATCTGCAAGACTCTGCTTCCAGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACTCAACCCAACCAACGGACAATCTCACCAAGCTCTACGTAGCTAACTTGCCTTGGACTCTGTCGCCGGCCGACATCAAGAACCTTTTTGCCCAATGCGGACCTGTAACTGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGGGAAGAGGCTCAGGCTGCCCTAGATAAATTTGATACATATGAATTATCAGGACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTCCTTCTCCTTCTCCACCACCTCCTTCTGGTCGTCGCAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTTACATGGAAAGCAAGATCTACCCATCTCAGGCAAATCTTCACTGAAAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTAGACGGGAAGGAGTTAATGGGACGACCCCTTCGCCTAACATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGACCAAATTAAAGACGCTGGAATTGAAGATGAAGACCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA 885 0.4531 MATLESALTLFAPQRFSDNYRSSAKPPHSIKLHTSTSLFFSSKASFKSARLCFQLCSALQELPTTEKTPDSTQPTDNLTKLYVANLPWTLSPADIKNLFAQCGPVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSGRIIRVEFAKQLNKPPPSPSPSPPPPSGRRNPRETRHVLYVSNLTWKARSTHLRQIFTENFKTPVSARVVFDSPSKRSAGYGFVSFLTKEDAEAAISAVDGKELMGRPLRLTFSEKKDKEAGGGKEEDQIKDAGIEDEDQSSDAQPEES 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6433g00002 294 CDD RRM_SF 81 152 - -
Vium6433g00002 294 SUPERFAMILY RNA-binding domain, RBD 159 265 IPR035979 GO:0003676
Vium6433g00002 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Vium6433g00002 294 MobiDBLite consensus disorder prediction 257 283 - -
Vium6433g00002 294 SUPERFAMILY RNA-binding domain, RBD 71 178 IPR035979 GO:0003676
Vium6433g00002 294 MobiDBLite consensus disorder prediction 159 174 - -
Vium6433g00002 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Vium6433g00002 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Vium6433g00002 294 SMART rrm1_1 80 152 IPR000504 GO:0003723
Vium6433g00002 294 SMART rrm1_1 183 257 IPR000504 GO:0003723
Vium6433g00002 294 MobiDBLite consensus disorder prediction 155 178 - -
Vium6433g00002 294 MobiDBLite consensus disorder prediction 257 294 - -
Vium6433g00002 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Vium6433g00002 294 Gene3D - 54 158 IPR012677 -
Vium6433g00002 294 Gene3D - 159 276 IPR012677 -
Vium6433g00002 294 PANTHER OS02G0815200 PROTEIN 18 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6433g00002 Vium-Chr6433 9575 13168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6433g00002 70 263 Eukaryotic Initiation Factors Gene Family AT4G34110 28.708 8.01e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6433g00002 - - vum:124843240 547.74