Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6432g00004 ATGGTCTCCGGCATTGACATGTCACTCGACGACATTATGAGGTACTCCGCCAAGGCGGCGGCGTCTCGCCGGCTATACACATTTGTTCGCAACCCGGTCAGAACGACGCCGTATCCCGTTCCTCTGGCAAGGTATCACGGAATGATTCCAGAAATGGATTTTGAAGATGACGGTGCCGCTATGATCGAAAGCGGAACCAAACTCTTGATATCTAACTTGGATCTTGGAGTTTCAAACGGTGATATAAAGCTGCTGTTTTCGGAAGAGGGTGAATTGAAAAGATGCTCCATTCATTATGATCAGAACGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTTATGAGACACTCTGATGCTTTATCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTAGTTGGAACTAGTAGTTCTTTTGTTTCCTCTCTTCGTCAAAATAGCTTACTGGGAAGACCAAGTGATTCACTTCTAAGCAAAGGAGAAAGAGTTAGAGGTAGGGGGTTCCACAACGACTTTGTACATGACTACATTCCAAGGGTCCGTGGAGAAGAGAATGGATATATTCGAGAGTTATATTTAACAGATATGGATGATGCTTTGGAGAGGCCTCACCGCGTTCCGAGATACCACGCAAAAGTAAAGAGCAGTAATAGAGAAGTAACTGCTAAAGATCTTGATGATGATTTGGAGAGGTATCACCTAGAGGCTAAGCGGATAAAAGAACAAAATGGAAAGTCAGATAATCATTGA 774 0.4341 MVSGIDMSLDDIMRYSAKAAASRRLYTFVRNPVRTTPYPVPLARYHGMIPEMDFEDDGAAMIESGTKLLISNLDLGVSNGDIKLLFSEEGELKRCSIHYDQNGRSKGTAEVVFMRHSDALSAIKKYNNMRLDGKPLQIELVGTSSSFVSSLRQNSLLGRPSDSLLSKGERVRGRGFHNDFVHDYIPRVRGEENGYIRELYLTDMDDALERPHRVPRYHAKVKSSNREVTAKDLDDDLERYHLEAKRIKEQNGKSDNH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6432g00004 257 CDD RRM_THOC4 66 140 - -
Vium6432g00004 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Vium6432g00004 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 143 IPR000504 GO:0003723
Vium6432g00004 257 SMART rrm1_1 67 139 IPR000504 GO:0003723
Vium6432g00004 257 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 60 244 - -
Vium6432g00004 257 Coils Coil 230 250 - -
Vium6432g00004 257 Gene3D - 53 193 IPR012677 -
Vium6432g00004 257 SUPERFAMILY RNA-binding domain, RBD 62 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6432g00004 Vium-Chr6432 36432 38614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6432g00004 65 141 Eukaryotic Initiation Factors Gene Family AT2G23350 33.766 6.72e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6432g00004 K12881 - gmx:100785926 318.931