Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6432g00001 ATGGATAACTATGGATCATCTTCTCCATACCGGTATCCAAGCCCATACGGGTACCCTCCCAACCCTCATCAACCATACCCTCCTCCTCCAGTTTCAGCTCCTGATCCATATGCACAAGCTCCTTATCCTTCATATCCTTACCTTTCTTCACATTCCTTCAACTATTCTCACCATGGACCTCCTAGACCTTCCTCACATTCTGGCCATTTTGAGTATTCTTATCCTCCTAACGCCATGGATTTTTCTCACCCTCCTCCAACATCTTATGCTCCTCCTCCCACTTATCCTTATCCCTACCATGTGCCTCCACCAAATCATGGCTCTCCCAGGCCTCCCCTTTTTCACCAGCCCAGTTACCAATATGGTTCACCTCAATACTATTATCCACCAAAGGAGGCCTATTCGCCGCCTCCTGATATCCATTCCGGCACCAATAGCTTCTCTAGTCCTTATTGGCCGGATAATACAAGCACTGCTGAAGGAGGTAAAGTGTCACAAAGTAGTGACAATTCCATTTCCACGCATTCTCAGGGTTCTTCTTACCCAGCTTTGGATGATCTTATGAGCAATGTTAGGTTGTCTGATGGCAAACCAACTGCTCCTGCATCACCTCCTGCGCCTGCAGGGCATCCGCTTATGCATTCCATTTCAGTTCCTAAGTTGCAACAGAAGAAGGAGGAGTTTTATGGATATTCTAATAACTCCTTCTCTGGGTGGGGATCCTCCTATCCCACTCGGATGAATTCTTCTAGCCCTTCAGATTTTTCTGGCTCATTTAATGAATCAGTGTATGGTGAACGTTTGCAGATTGTTCCAGTGCAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTCCATGGAAATTTAGATATATGGGTCCATGAAGCCAAGAATCTTCCAAATATGGATATGTTTCACAAAACTTTAGGTGATGTGTTTGGTAAATTGCCTGGTGGTGTGAGCAATAAAATTGAAGGAACTATGAATAAGAAGATTACCAGTGATCCTTATGTATCGATTTTAGTATCCAATGCTGTAATTGGGAGGACTTATGTCATTAGCAACTCTGAAAACCCTGTTTGGTGGCAACATTTCTATGTTCCTGTTGCACATCATGCTGCAGAAGTACACTTTCTTGTTAAAGACAGTGATGTCGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAGCGAATATACTCAGGAGAAACAGTTGAAGGATTTTTCCCTATCCTGAATAGTAATGGGAAGCCATGTAAGCAAGATGCTGTCCTGAAGCTATCCATTCAGTACATTCCTATGGAGAAACTGAGCATTTATCACAAAGGAGTTGGAGCAGGGCCTGAATACGTGGGGGTTCCTGGAACATATTTTCCTTTGAGGAAAGGTGGAACTGTTTCTCTGTATCAAGATGCTCATGTTCCAGATGGAAGCCTCCCTAATGTGTTGCTTGACAGTGGGATGTACTATGCGCATGGAAAGTGTTGGCAAGATATCTTTGACGCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGTTGGTCAGTGTGGCACAAAGTAAGGTTGATTAGGAATGCTGCTGGTTATTCTCCAGATTATACCTTAGGTGATCTTCTGAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTGCTTATCTGGGATGATCCTACATCAAGAAACATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGCAGTGGTAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACGATATATACACATCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAGTAATAGAAGAAAAGTGATAGCATTTGTTGGTGGACTTGATTTGTGTGACGGGCGATATGATACTCCCCACCACCCTATTTTTAGAACATTGAATACAGATCATAAGGATGACTACCACAACCCCACTTTCACGGGTAATGTTGGTGGTTGTCCTCGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCGGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGACTACTTCATACGATGATGCTTTGCTAAGGTTGGAAAGAATTCCAGATTTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCGGTTAAGGGATTTCCGAAGGATCCAAAAAATGCAACAAGCAAGAATCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATATTAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTTATCGGCTCTTCATACAATTGGAGTCAACATAAAGACCTTGGTGCTGATAACTTAATCCCAATGGAAATTGCTCTAAAGATTACTGAAAAGATAAAAGCACATGAAAGATTTGCAGTGTATATTGTTATTCCCATGTGGCCGGAAGGAGTTCCAACAGGGGCTGCAACGCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACCATTTACAAGGCTTTGGTTGAAGCAGGGCTTGAAGCAGCATTTTCTCCACAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCATCAGTATGTATGATAATGTTGGTGTGGCAGGATCTCCTCCCCCAGCAAATAGTCCTCAAGTGGCTAGCCGAAATAGCCGACGTTTCATGATTTATGTTCACTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATTAACCAGCGCTCCATGGAAGGAACAAGGGACAGTGAAATTGCAATGGGCGCCTATCAACCTCATTATACATGGGCAAAAGCACAAACTTATCCACACGGTCAAATCCATGGATATAGGATGTCCCTTTGGGCAGAACATACAGGAACAATTGAGGACTGCTTCTTGCAACCTGAGAGTCTTGAATGTGTATCTAGGATTAGGGCAATGGGAGAAATGAACTGGAAACAATTTGCAGCAGATGAAGTAACAGAGATGAGAGGGCATTTACTGAAATACCCTGTAGAAGTTGATAGAAAGGGCAAGGTTAGATCACTTCCAGACCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3303 0.4226 MDNYGSSSPYRYPSPYGYPPNPHQPYPPPPVSAPDPYAQAPYPSYPYLSSHSFNYSHHGPPRPSSHSGHFEYSYPPNAMDFSHPPPTSYAPPPTYPYPYHVPPPNHGSPRPPLFHQPSYQYGSPQYYYPPKEAYSPPPDIHSGTNSFSSPYWPDNTSTAEGGKVSQSSDNSISTHSQGSSYPALDDLMSNVRLSDGKPTAPASPPAPAGHPLMHSISVPKLQQKKEEFYGYSNNSFSGWGSSYPTRMNSSSPSDFSGSFNESVYGERLQIVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDVFGKLPGGVSNKIEGTMNKKITSDPYVSILVSNAVIGRTYVISNSENPVWWQHFYVPVAHHAAEVHFLVKDSDVVGSQLIGIVAIPVERIYSGETVEGFFPILNSNGKPCKQDAVLKLSIQYIPMEKLSIYHKGVGAGPEYVGVPGTYFPLRKGGTVSLYQDAHVPDGSLPNVLLDSGMYYAHGKCWQDIFDAISQARRLIYITGWSVWHKVRLIRNAAGYSPDYTLGDLLRSKSQEGVRVLLLIWDDPTSRNILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKTVIVDADAGSNRRKVIAFVGGLDLCDGRYDTPHHPIFRTLNTDHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLTTSYDDALLRLERIPDFIGINDAPSVGEDDPEVWHVQIFRSIDSNSVKGFPKDPKNATSKNLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGADNLIPMEIALKITEKIKAHERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAISMYDNVGVAGSPPPANSPQVASRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHYTWAKAQTYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVSRIRAMGEMNWKQFAADEVTEMRGHLLKYPVEVDRKGKVRSLPDQEEFPDVGGKIVGSFLAMKENLTI 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6432g00001 1100 MobiDBLite consensus disorder prediction 1 37 - -
Vium6432g00001 1100 Pfam C2 domain 286 412 IPR000008 -
Vium6432g00001 1100 CDD C2_plant_PLD 281 433 - -
Vium6432g00001 1100 MobiDBLite consensus disorder prediction 79 111 - -
Vium6432g00001 1100 Pfam Phospholipase D Active site motif 947 973 IPR001736 GO:0003824
Vium6432g00001 1100 Pfam Phospholipase D Active site motif 612 646 IPR001736 GO:0003824
Vium6432g00001 1100 Gene3D C2 domain 281 428 IPR035892 -
Vium6432g00001 1100 FunFam Phospholipase D 759 992 - -
Vium6432g00001 1100 Pfam Phospholipase D C terminal 1020 1090 IPR024632 -
Vium6432g00001 1100 Gene3D Endonuclease Chain A 487 726 - -
Vium6432g00001 1100 ProSiteProfiles C2 domain profile. 264 410 IPR000008 -
Vium6432g00001 1100 SMART pld_4 611 646 IPR001736 GO:0003824
Vium6432g00001 1100 SMART pld_4 946 973 IPR001736 GO:0003824
Vium6432g00001 1100 SUPERFAMILY Phospholipase D/nuclease 490 711 - -
Vium6432g00001 1100 SUPERFAMILY Phospholipase D/nuclease 776 1032 - -
Vium6432g00001 1100 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 284 435 IPR035892 -
Vium6432g00001 1100 MobiDBLite consensus disorder prediction 56 213 - -
Vium6432g00001 1100 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 646 IPR001736 GO:0003824
Vium6432g00001 1100 SMART C2_3c 287 409 IPR000008 -
Vium6432g00001 1100 FunFam Phospholipase D delta 281 428 - -
Vium6432g00001 1100 MobiDBLite consensus disorder prediction 139 184 - -
Vium6432g00001 1100 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 946 973 IPR001736 GO:0003824
Vium6432g00001 1100 MobiDBLite consensus disorder prediction 13 37 - -
Vium6432g00001 1100 PANTHER PHOSPHOLIPASE D 276 1091 IPR015679 -
Vium6432g00001 1100 Gene3D Endonuclease Chain A 758 1000 - -
Vium6432g00001 1100 FunFam Phospholipase D delta 487 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6432g00001 Vium-Chr6432 3466 11638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6432g00001 65 1100 Phospholipase D Gene Family (Wang group) AT2G42010 68.638 0.0 1457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6432g00001 K01115 - gmx:100791059 1874.75