Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00057 ATGTCTGAATCTCGGAAACAACTGACTTTTAAACCGAGGCAGAAACCTCACCACTCCGTGCAAGAGTCCAAAGCAATGAGAAAACTACGAATAATTTATAACGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGAGGTGTTTCAGAAATCGAAAAAAGCAAAGAGAAACTTTTGTGAGATCTCTCTCCCACCTCTTCCTCAAACTTTCACCACTCCTGAAACCAATTCCTTTGAGGTGAATAGCAACAGCAATGCAGTGAGGGTGAAGGTTTGCATCGAAGGTCAACCCCAGACAAAAAAGAGGGTTTTGACCCAAACCCCATCAACAAGAAGGAACACTTCTGGGAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGATCCTTTTCAGAGTACTCGCATATGGCTTGGTACTTTCAACACAGCGGAAGAGGCTTCTCAAGCCTACGAAGCCAGAAGGCTTGAGTTTGAAGCCAAGGCAAAGGCCAGAGCCTACAAAATTGTTTCAGAGCCTTTGTCCACAACTTCTGATAAGAGCATATGCTGTAACTCTTCTGATGCTGCTGCTGTGTCTGTGTCTGAGAAGTTTTCTACTACCACTGATGACTCAGACGGTGTGTTGTCACATCCATCACCTTCTTCTGTGCTTGAGTTGGATTCTTCATCTTCCAAACCCATTGACAATGACCATGTTTTGAGTGAGGAAGCTGTTGAGACTAATAATTTGGTTTCTGAATTTGCTGAACTTGAAATTCCAGATTTGAGTCTTTTGAACTTGCCGTCACCATTCATCGGTGCTACTGCTGGTCTTGCATCTGGTACTGAACCAGACTTTGGTATTGATTTTGATTGGCTATCACTTGAGGATTATGGTCAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATTCGCATTTATGGGTTTGATAATAATGAGCCTAGTAAACTTCCTGATTTTGATTTTGGCGATTTCTGTGCTGAAGAGTTTGCAGGTTGGACCGAGGAGCCCCTCAACATACCTTGTGCCTAA 1056 0.4328 MSESRKQLTFKPRQKPHHSVQESKAMRKLRIIYNDPDATDSSDDESEVFQKSKKAKRNFCEISLPPLPQTFTTPETNSFEVNSNSNAVRVKVCIEGQPQTKKRVLTQTPSTRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAKAKARAYKIVSEPLSTTSDKSICCNSSDAAAVSVSEKFSTTTDDSDGVLSHPSPSSVLELDSSSSKPIDNDHVLSEEAVETNNLVSEFAELEIPDLSLLNLPSPFIGATAGLASGTEPDFGIDFDWLSLEDYGQGFDDFGGLEDIRIYGFDNNEPSKLPDFDFGDFCAEEFAGWTEEPLNIPCA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00057 351 ProSiteProfiles AP2/ERF domain profile. 118 180 IPR001471 GO:0003700|GO:0006355
Vium6428g00057 351 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Vium6428g00057 351 MobiDBLite consensus disorder prediction 207 236 - -
Vium6428g00057 351 Gene3D AP2/ERF domain 117 175 IPR036955 GO:0003700|GO:0006355
Vium6428g00057 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 231 - -
Vium6428g00057 351 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Vium6428g00057 351 MobiDBLite consensus disorder prediction 1 27 - -
Vium6428g00057 351 CDD AP2 118 165 IPR001471 GO:0003700|GO:0006355
Vium6428g00057 351 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vium6428g00057 351 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Vium6428g00057 351 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00057 Vium-Chr6428 259050 260366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00057 21 350 AP2-EREBP Transcription Factor Family AT1G68550 34.294 3.21e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6428g00057 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00057 - - gmx:102660769 480.715