Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00055 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCGCAGGACACGGTTTCTGAAGTGAAGCAAAGTATTGAAACTGTTCAGGGTGCAGATGTGTATCCTGCTGCACAGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTAGAGGAGAATAGCGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCCCATCTGGTGAAGGTTCTACTACTTCAACTGCACCATCGACCAAGACACCACAGACTAGTGCACCTCCTACTTCAACAACACCAGTGTCAACAGCTCCCCAAGCTCCAGCTACAGTCGAGGCACCGCCAGCAACTGTTACTGCACCTGTGTCTTCAGCTCCAGCTCCTGCTTCTATTTCTTCAGGAACTCCTGTGGAGGGGTTTGATATCTATGGGCAGGCGGCATCCAATCTTGTTGCTGGAAGCAATTTGGAGGGAACAATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAGCAAGCTGAAGCTCCTCTTGTAGCCAGAGCGTCTGCAGGTGCTCAACCTGCAAATCCTCCTGCCGCTGCTGCTCCTCAAACAGCACAACCTGCTCCGATTACCTCAACTGGACCTAATGCTAATCCCTTAGACCTTTTTCCCCAGGGCCTTCCCAATGTGGGTTCTGGTGCAGCTGGTGCCGGCTCGTTGGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAACTCGGCAAACAAAATCCTCATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGATGGCGAAGGGAATATATTGGGGCAGCTGGCTGGTGGCATGCCTCAAGCAGTGACTGTCACTCCTGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCGATCGTATTGGAGGTGTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1191 0.4836 MKVFVKTLKGTHFEIEVQPQDTVSEVKQSIETVQGADVYPAAQQMLIHQGKVLKDATTLEENSVAENSFIVIMLSKSKSPSGEGSTTSTAPSTKTPQTSAPPTSTTPVSTAPQAPATVEAPPATVTAPVSSAPAPASISSGTPVEGFDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARASAGAQPANPPAAAAPQTAQPAPITSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEDGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00055 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 204 IPR015940 -
Vium6428g00055 396 SMART uba_6 351 388 IPR015940 -
Vium6428g00055 396 SMART uba_6 163 203 IPR015940 -
Vium6428g00055 396 SMART CBM 268 311 IPR006636 -
Vium6428g00055 396 SUPERFAMILY UBA-like 160 212 IPR009060 GO:0005515
Vium6428g00055 396 NCBIfam UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Vium6428g00055 396 MobiDBLite consensus disorder prediction 77 113 - -
Vium6428g00055 396 Gene3D - 156 206 - -
Vium6428g00055 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vium6428g00055 396 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Vium6428g00055 396 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Vium6428g00055 396 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Vium6428g00055 396 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Vium6428g00055 396 FunFam UV excision repair protein RAD23 homolog 342 390 - -
Vium6428g00055 396 FunFam UV excision repair protein RAD23 1 80 - -
Vium6428g00055 396 CDD Ubl_Rad23 1 74 - -
Vium6428g00055 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vium6428g00055 396 MobiDBLite consensus disorder prediction 217 249 - -
Vium6428g00055 396 MobiDBLite consensus disorder prediction 235 249 - -
Vium6428g00055 396 CDD UBA2_RAD23_plant 347 389 - -
Vium6428g00055 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Vium6428g00055 396 MobiDBLite consensus disorder prediction 77 140 - -
Vium6428g00055 396 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Vium6428g00055 396 FunFam UV excision repair protein RAD23 B 261 326 - -
Vium6428g00055 396 SUPERFAMILY UBA-like 334 394 IPR009060 GO:0005515
Vium6428g00055 396 Pfam UBA/TS-N domain 166 201 IPR015940 -
Vium6428g00055 396 Pfam UBA/TS-N domain 351 386 IPR015940 -
Vium6428g00055 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Vium6428g00055 396 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vium6428g00055 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Vium6428g00055 396 Gene3D - 1 80 - -
Vium6428g00055 396 Gene3D - 343 390 - -
Vium6428g00055 396 CDD UBA1_Rad23_plant 157 206 - -
Vium6428g00055 396 FunFam UV excision repair protein RAD23 homolog 156 206 - -
Vium6428g00055 396 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6428g00055 396 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00055 Vium-Chr6428 233599 237217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00055 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 8.03e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00055 K10839 - gmx:100814162 596.275