Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00053 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCTCAGAACACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTATTCAGGGTGCAGATGTCTATCCTGCTGCCCAGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAACGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACTTCTGGTGAAGGATCTACTACTTCAGCTGCACCATCGACCAAGACACCACAGACCAGTGCACCTCCTACTTCAACAGCGCCAGTGTCAACAGCGCCTCAAGCTCCAGCTGCAACTGAGGCACCGCCGGCAACTGTTTCTGCACCTGTATCTACACCTTCAGTTCCACCTCCTGTTTCTATTTCTTCAGGAACTCCTGTGGAGGGGTCTGATATCTATGGGCAGGCGGCATCCAATCTCGTTGCTGGAAGCAATTTGGAGGGAACTATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAACAAGCTGAAGCTCCACTTGTAGCCAGAGCGCCTGCAGGTGCTCAACCCGCAAATCCTCCTGCCGCTGCTGCTCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGACTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTACAGCCTATGCTACAGGAACTCGGCAAACAAAATCCTCATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAATATATTGGGGCAGCTGGCTGGTGGCATGCCTCAAGCAGTGACTGTCACTCCTGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCGATCGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1197 0.4829 MKVFVKTLKGTHFEIEVQPQNTVSEVKKSIETIQGADVYPAAQQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSGEGSTTSAAPSTKTPQTSAPPTSTAPVSTAPQAPAATEAPPATVSAPVSTPSVPPPVSISSGTPVEGSDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00053 398 FunFam UV excision repair protein RAD23 B 263 328 - -
Vium6428g00053 398 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Vium6428g00053 398 NCBIfam UV excision repair protein Rad23 1 396 IPR004806 GO:0006289
Vium6428g00053 398 SMART uba_6 165 205 IPR015940 -
Vium6428g00053 398 SMART uba_6 353 390 IPR015940 -
Vium6428g00053 398 Pfam UBA/TS-N domain 353 388 IPR015940 -
Vium6428g00053 398 Pfam UBA/TS-N domain 168 203 IPR015940 -
Vium6428g00053 398 FunFam UV excision repair protein RAD23 homolog 158 208 - -
Vium6428g00053 398 Gene3D - 263 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6428g00053 398 MobiDBLite consensus disorder prediction 77 146 - -
Vium6428g00053 398 PRINTS DNA repair protein Rad23 signature 298 320 IPR004806 GO:0006289
Vium6428g00053 398 PRINTS DNA repair protein Rad23 signature 347 363 IPR004806 GO:0006289
Vium6428g00053 398 PRINTS DNA repair protein Rad23 signature 379 394 IPR004806 GO:0006289
Vium6428g00053 398 PRINTS DNA repair protein Rad23 signature 364 378 IPR004806 GO:0006289
Vium6428g00053 398 FunFam UV excision repair protein RAD23 1 80 - -
Vium6428g00053 398 FunFam UV excision repair protein RAD23 homolog 344 392 - -
Vium6428g00053 398 MobiDBLite consensus disorder prediction 77 112 - -
Vium6428g00053 398 SUPERFAMILY XPC-binding domain 269 334 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6428g00053 398 CDD Ubl_Rad23 1 74 - -
Vium6428g00053 398 Gene3D - 1 80 - -
Vium6428g00053 398 Gene3D - 345 392 - -
Vium6428g00053 398 SMART CBM 270 313 IPR006636 -
Vium6428g00053 398 MobiDBLite consensus disorder prediction 220 247 - -
Vium6428g00053 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 350 391 IPR015940 -
Vium6428g00053 398 SUPERFAMILY UBA-like 162 214 IPR009060 GO:0005515
Vium6428g00053 398 CDD UBA1_Rad23_plant 159 208 - -
Vium6428g00053 398 Pfam XPC-binding domain 272 327 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vium6428g00053 398 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vium6428g00053 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 163 206 IPR015940 -
Vium6428g00053 398 CDD UBA2_RAD23_plant 349 391 - -
Vium6428g00053 398 Gene3D - 158 208 - -
Vium6428g00053 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 386 - -
Vium6428g00053 398 SMART ubq_7 1 75 IPR000626 GO:0005515
Vium6428g00053 398 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vium6428g00053 398 SUPERFAMILY UBA-like 334 396 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00053 Vium-Chr6428 196750 200511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00053 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 7.92e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00053 K10839 - gmx:100814162 580.096