Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00052 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCTCAGAACACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTATTCAGGGTGCAGATGTCTATCCTGCTGCCCAGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAACGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACTTCTGGTGAAGGATCTACTACTTCAGCTGCACCATCGACCAAGACACCACAGACCAGTGCACCTCCTACTTCAACAGCGCCAGTGTCAACAGCGCCTCAAGCTCCAGCTGCAACTGAGGCACCGCCGGCAACTGTTTCTGCACCTGTATCTACACCTTCAGTTCCACCTCCTGTTTCTATTTCTTCAGGAACTCCTGTCAGGGAGGGGTCTGATATCTATGGGCAGGCGGCATCCAATCTCGTTGCTGGAAGCAATTTGGAGGGAACTATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAACAAGCTGAAGCTCCACTTGTAGCCAGAGCGCCTGCAGGTGCTCAACCCGCAAATCCTCCTGCCGCTGCTGCTCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGACTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTACAGCCTATGCTACAGGAACTCGGCAAACAAAATCCTCATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAATATATTGGGGCAGCTGGCTGGTGGCATGCCTCAAGCAGTGACTGTCACTCCTGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCGATCGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1200 0.4833 MKVFVKTLKGTHFEIEVQPQNTVSEVKKSIETIQGADVYPAAQQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSGEGSTTSAAPSTKTPQTSAPPTSTAPVSTAPQAPAATEAPPATVSAPVSTPSVPPPVSISSGTPVREGSDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00052 399 Pfam XPC-binding domain 273 328 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vium6428g00052 399 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Vium6428g00052 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 351 392 IPR015940 -
Vium6428g00052 399 CDD UBA2_RAD23_plant 350 392 - -
Vium6428g00052 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 387 - -
Vium6428g00052 399 Gene3D - 159 209 - -
Vium6428g00052 399 Gene3D - 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6428g00052 399 SMART uba_6 166 206 IPR015940 -
Vium6428g00052 399 SMART uba_6 354 391 IPR015940 -
Vium6428g00052 399 PRINTS DNA repair protein Rad23 signature 380 395 IPR004806 GO:0006289
Vium6428g00052 399 PRINTS DNA repair protein Rad23 signature 348 364 IPR004806 GO:0006289
Vium6428g00052 399 PRINTS DNA repair protein Rad23 signature 299 321 IPR004806 GO:0006289
Vium6428g00052 399 PRINTS DNA repair protein Rad23 signature 365 379 IPR004806 GO:0006289
Vium6428g00052 399 Pfam UBA/TS-N domain 354 389 IPR015940 -
Vium6428g00052 399 Pfam UBA/TS-N domain 169 204 IPR015940 -
Vium6428g00052 399 MobiDBLite consensus disorder prediction 77 112 - -
Vium6428g00052 399 FunFam UV excision repair protein RAD23 B 264 329 - -
Vium6428g00052 399 CDD Ubl_Rad23 1 74 - -
Vium6428g00052 399 FunFam UV excision repair protein RAD23 homolog 345 393 - -
Vium6428g00052 399 MobiDBLite consensus disorder prediction 221 251 - -
Vium6428g00052 399 Gene3D - 346 393 - -
Vium6428g00052 399 MobiDBLite consensus disorder prediction 77 150 - -
Vium6428g00052 399 SUPERFAMILY XPC-binding domain 270 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium6428g00052 399 FunFam UV excision repair protein RAD23 homolog 159 209 - -
Vium6428g00052 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 164 207 IPR015940 -
Vium6428g00052 399 SMART CBM 271 314 IPR006636 -
Vium6428g00052 399 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vium6428g00052 399 SUPERFAMILY UBA-like 163 215 IPR009060 GO:0005515
Vium6428g00052 399 SMART ubq_7 1 75 IPR000626 GO:0005515
Vium6428g00052 399 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vium6428g00052 399 FunFam UV excision repair protein RAD23 1 80 - -
Vium6428g00052 399 SUPERFAMILY UBA-like 335 397 IPR009060 GO:0005515
Vium6428g00052 399 NCBIfam UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Vium6428g00052 399 CDD UBA1_Rad23_plant 160 209 - -
Vium6428g00052 399 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00052 Vium-Chr6428 196750 200512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00052 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 8.59e-09 52.0