Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00045 ATGGCTACCGATGCCCGTGACTCGCGTCACAAGCATCGCCGATCACCCTCCCCGGAGGATGTGGACAGATCCTCGAAGCGCCACAAGCACCGCCACCGCCATCGCCACCGCCACGGGAACAAAAAGCGCGATGAAGATATTGAATTCGACGATCGAACAATTGCTGCTGTTCCTTCTCCAACTCCGCATAGACATGCACAGGAGGACGATGTGGAGGAAGGAGAGATCCTCGACGACGAAGCTCTCGATAGCGAGGTAGGGAAAAAAGAGACTGAATCTGATGTCGAACCTGGTGAAATCAAGGTGACTGGAGATCGAGATGTTCAATCCGATAATCAAAATTCGGGACACCTCACTGTAAATTCAGAAACTAATGAGGACATCAGGATTGATAAATTTATTAGTCCTGCAACCAATACAGATGGTGTCTCTCCTAATCGTTTAAGTGCTGAGACTCAAGATGGAAAACATGCTACAGATGGTCTGGACAATGGTTATTTGAATCCTAAATCTTCCAGGGCAGATAAGTGGCGGAATGGTGAGCTTGGACATTTTAAAGGGAATGAGAAACTAAAAGGTGACTTTGATGCACTGGAGGCTAATGTTAGGAAAACACATTTCCATAGGAATTCGTCATCCGAAAGTGGTGGAGACAAAGGTAGAATATCAGGAAGTTCTCCTTCTCATGGCAGATATAGAAGTCGATCAAGATCAATTGGTCATACAAGAGACCGGTCTCGTTCTCGTAGTGTCATAGATGAATATGTTCATTCCAAGAGAAGGCGCTCTGAATATGACTATGATGAGGAAAGAGTGAGGGCACGTGGAAGGGAACATGGTCATGGAAGTGTGGTAGATGATAGAAGGGAATACAGTAGTGGATATCACAATCGCGATGCCCATGATAGAGATAGGAGTAGGGATAGAGACTTGTACAGAGAAAAAAAACAAGAGGAAACAAGCAGGGGTAAGGAGATTGAGAGGGACCGTCAAAGGGTAAAGGAACGTGAAAGGAGCCGTGAGAGATATAAAAGGGATGTAGAAAAAGATAGGAGCAGGGAAAGGGAGGATAGGGACAGGAGGCAAGAAAAGGAAAGAGATAGGAGCTGGGAGACGGTGTTTGAGAGGGATATGAGAAGGGAAAAGGAAAGAGATAGGAGTAGGGACAGAACAAGAGATGCTAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGATAAGAATCGAGAAAGGGATAATATTAAGGAGAGGGCAAGGCGAGATGATAGATATAGGCACAAGGATAGAGACACTGCAAATGGTAAAGATAGGCATGTGCGTCATGAAGATGGTAATGACAATGGAGATAAATATAGAAAACATTCGAGACATGAAGAAAATGATTACCATTGGGATAGAAAAATAAATCCTGGTAATCCTGTAAAGGATTATACTTCAAGGGGGGGAAGTACTGCAGAAGTGGGTGAAAGCAAACTAACAAGCAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCACTTACCTGACCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAAAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAAGTGGTTGGAAATGAACGAAAAGACAAGGATACAGACATTCAAACTGAAACCTCTGAAGCACATGATGGTCAGAATGATGATGCCGATTATGTGGAGCCATCATTTACTGTTGGAAAATCTCCTGAAAATGTGACTGTTGCTTCTCAGAAGATATCTCTTGCTGGAGGCCTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTACTGTGACGATATATTTGGGGAGACACCAACGGGAGTTCGAAAATCAGGAAAAGGTGATGGTTTAATGATTGAAAGGGTTGGCCTACATGATAACTGGGATGATGCAGAGGGATACTACAGCTATCGAATTGGTGAAATACTTGATGGCCGGTATGAAGTCACTGCTGCACACGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTGAAGGTGGGAAATGGTGAGCCAGAGGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTCCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCCTTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGACATAAAGCCAGATAATATGTTGGTAAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCAATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGGCATATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAGTTATATGTAGGTAAGGTTCTTTTCCCTGGGCTTACTAACAATGACATGCTGCGACTTCACATGGAACTGAAGGGCCCATTTCCAAAGAAGATGCTACGAAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCAACCGAGGAAGATCCTGTGACAAAAAAGGCCATAAAGCGGCTGATTCTCAACATTAAGCCAAAAGATATTGGAACACTTATCACTGGCTCTTCCGGGGAGGATCCAAAAATGTTGGCCAACTTTAGGGATCTTTTGGAAAAAGTTTTTGTCCTGGATCCAGACAAGAGGCTGACAGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCGTACACTTTACTGGCGGTTCTTTCAGTGGAATGTACTGTTTCTATTGTAAGACAACTTGCCAATGGCAGTTTCCTTTAGTGTAG 3030 0.429 MATDARDSRHKHRRSPSPEDVDRSSKRHKHRHRHRHRHGNKKRDEDIEFDDRTIAAVPSPTPHRHAQEDDVEEGEILDDEALDSEVGKKETESDVEPGEIKVTGDRDVQSDNQNSGHLTVNSETNEDIRIDKFISPATNTDGVSPNRLSAETQDGKHATDGLDNGYLNPKSSRADKWRNGELGHFKGNEKLKGDFDALEANVRKTHFHRNSSSESGGDKGRISGSSPSHGRYRSRSRSIGHTRDRSRSRSVIDEYVHSKRRRSEYDYDEERVRARGREHGHGSVVDDRREYSSGYHNRDAHDRDRSRDRDLYREKKQEETSRGKEIERDRQRVKERERSRERYKRDVEKDRSREREDRDRRQEKERDRSWETVFERDMRREKERDRSRDRTRDAKRDRDLENERDDKNRERDNIKERARRDDRYRHKDRDTANGKDRHVRHEDGNDNGDKYRKHSRHEENDYHWDRKINPGNPVKDYTSRGGSTAEVGESKLTSSEVEPDDLEEDTLHLPDQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEVVGNERKDKDTDIQTETSEAHDGQNDDADYVEPSFTVGKSPENVTVASQKISLAGGLGEGTPKSERSEDKYCDDIFGETPTGVRKSGKGDGLMIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKVGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLAYDHPLDIWSVGCCLYELYVGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTLITGSSGEDPKMLANFRDLLEKVFVLDPDKRLTVSQALNHPFITGVHFTGGSFSGMYCFYCKTTCQWQFPLV 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 174 193 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 237 470 - -
Vium6428g00045 1009 PANTHER DUAL SPECIFICITY PROTEIN KINASE 368 981 - -
Vium6428g00045 1009 Gene3D Phosphorylase Kinase; domain 1 635 724 - -
Vium6428g00045 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vium6428g00045 1009 FunFam Serine/threonine-protein kinase PRP4 homolog 725 981 - -
Vium6428g00045 1009 Coils Coil 326 346 - -
Vium6428g00045 1009 SMART serkin_6 665 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 538 571 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 81 106 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 216 233 - -
Vium6428g00045 1009 Pfam Protein kinase domain 667 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6428g00045 1009 CDD STKc_PRP4 664 980 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 512 526 - -
Vium6428g00045 1009 ProSiteProfiles Protein kinase domain profile. 665 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6428g00045 1009 FunFam serine/threonine-protein kinase PRP4 homolog 635 724 - -
Vium6428g00045 1009 Gene3D Transferase(Phosphotransferase) domain 1 725 981 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 26 40 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 107 123 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 206 526 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 1 193 - -
Vium6428g00045 1009 SUPERFAMILY Protein kinase-like (PK-like) 652 985 IPR011009 -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 476 491 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 1 25 - -
Vium6428g00045 1009 MobiDBLite consensus disorder prediction 137 152 - -
Vium6428g00045 1009 Coils Coil 397 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00045 Vium-Chr6428 166915 173207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00045 672 984 MAP Kinase Gene Family AT4G01370 33.851 1.50e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vium6428g00045 Pkinase 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00045 K08827 - gmx:100776908 1600.1