Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00019 ATGAGTTTTCAAATCAAGAAACCAATATTTTCAGCTGTCGTATCAGTATTACTCATTTCAATTACAAAACTCTTCCATTCTTATTTCTCAATACCATTCTCACCATTCAATGTTTCCATTCCTATTGCCACGACCCTTTCTGTTCTAATCATATGCAAATTTTTCTTAACTTCTAAAACCCACTCTTCCACTCCCCCTGGTCCTCTATCAGTTCCTATATTTGGTAACTGGTTGCAAGTTGGCAACGATCTCAACCACCGTCTTCTAGCGTCAATGTCACAGACCTATGGTCCTGTGTTCCTACTCAAACTAGGTTCCAAAAACTTGGTTGTGGTCTCTGATCCCGAGCTCGCCACCCAAGTGCTCCATTCACAAGGTGTGGAATTTGGCTCGCGCCCACGAAATGTTGTGTTTGATATCTTCACTGGGAACGGCCAAGACATGGTTTTCACTGTTTATGGTGACCACTGGCGCAAAATGCGCAGAATCATGACGCTGCCATTCTTCACCAACAAGGTTGTCCACAACTACAGCATCATGTGGGAGGAGGAGATGGACCTGGTGGTGCGTGACCTCAACCTGAACGAGAGAGTGAGGAGCGAAGGCATTGTTATCAGAAAGCGGCTTCAGTTGATGCTATACAATATCATGTATAGGATGATGTTTGACGCCAAGTTTGAGTCACAAGAGGACCCTTTGTTCATTCAGGCCACGAGGTTTAACTCCGAGAGAAGCCGTTTGGCACAGAGTTTTGAATACAATTATGGGGATTTTATACCATTGCTCAGGCCGTTCTTGAGGGGGTACCTAAACAAGTGCAAGGACTTGCAATCTAGGAGGCTTGCATTTTTCAACACCCACTACGTTGAGAAAAGAAGACAAATAATGGCTGCCAACGGGGAGAAACACAAGATCAGCTGTGCTATTGATCACATCATAGATGCACAGATGAAGGGAGAAATCAGTGAAGAGAATGTGATATATATAGTAGAAAACATCAACGTTGCAGCAATCGAGACAACATTATGGTCCATGGAATGGGCAATAGCAGAGTTGGTTAATCATCCAAGCGTTCAAAAGAAGATACGTGATGAGATATCAGAAGTGCTTAAAGGGGAGCCAGTGACGGAATCAAACCTACACGAGCTCCCATACTTACAAGCAACTGTGAAAGAAACACTGAGACTTCACACCCCGATTCCTCTCTTGGTGCCCCACATGAACCTGGAAGAAGCAAAGTTAGGAGGGTACACTATACCAAAGGAGTCCAAGGTGGTGGTGAATGCTTGGTGGCTTGCGAACAACCCATCATGGTGGAAGAATCCAGAGGAGTTCAGGCCAGAAAGGTTTTTGCAAGAGGAGTGTGCAACAGATGCTGTTGCTGGAGGAAAGGTTGATTTTAGGTTCGTGCCATTTGGTGTGGGGAGGAGGAGTTGCCCTGGAATCATACTTGCATTACCAATACTTGGACTTGTGATAGCAAAAATGGTGTCAAATTTTGAGCTGAGTGCTCCAAAAGGGACAAAGATAGATGTAAGTGAAAAAGGAGGGCAATTCAGCTTGCACATTGCTAACCACTCCACTGTCTTGTTCCATCCAATTAGAACCCTGTGA 1614 0.4455 MSFQIKKPIFSAVVSVLLISITKLFHSYFSIPFSPFNVSIPIATTLSVLIICKFFLTSKTHSSTPPGPLSVPIFGNWLQVGNDLNHRLLASMSQTYGPVFLLKLGSKNLVVVSDPELATQVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSIMWEEEMDLVVRDLNLNERVRSEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIQATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNTHYVEKRRQIMAANGEKHKISCAIDHIIDAQMKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPSVQKKIRDEISEVLKGEPVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPSWWKNPEEFRPERFLQEECATDAVAGGKVDFRFVPFGVGRRSCPGIILALPILGLVIAKMVSNFELSAPKGTKIDVSEKGGQFSLHIANHSTVLFHPIRTL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00019 537 FunFam Trans-cinnamate 4-monooxygenase 55 528 - -
Vium6428g00019 537 PRINTS P450 superfamily signature 336 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS P450 superfamily signature 470 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 325 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 345 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 93 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 479 502 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 212 230 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 117 138 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PRINTS E-class P450 group I signature 469 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 Pfam Cytochrome P450 65 524 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 45 534 - -
Vium6428g00019 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 472 481 IPR017972 GO:0005506|GO:0016705
Vium6428g00019 537 Gene3D Cytochrome P450 56 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6428g00019 537 SUPERFAMILY Cytochrome P450 65 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00019 Vium-Chr6428 159433 161508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00019 74 533 Monolignol Biosynthesis Gene Families AT2G30490 65.659 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00019 K00487 - gmx:100812188 993.416