Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00013 ATGCAAAGCTTCAACCCAACCGAATCAGAATCAACCTCGCCACTCTATTCCCACTCTTCCTTCATTCACCGGGGAAATGACGCCAACCCAAATCCCACGCGCTTCTCTGATCTTCAGCATTCTTTTCGGCAGCACGATGCTGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCGAAGTCGAACAATATGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGAGGTGCAGAGTTTGGTTCGACGGTTGTAGGGTGTGTTGAGACAGAGTCTCAACACATGTATCAGAGAGGAAACAGTAGCGCCACCATGCCCATGGGGAACCAGTATGTTGAGAAATGGGCAGATGATAGTCAACACACTGAAGATACTTGCACAGACATCGACACCGATGATAAAAACCAATGTTTCTCTACCGTGTCTTGGGGCAATGGAGTTGGAGACGGGGCACTTGTAGTTGTGGACTCCCAGGATCAAAGTAAGACAAAGGTTAAACCCGAAGACCAGAAGACCGTTCGTAGGCTAGCTCAGAATCGCGAGGCAGCTAGGAAGAGTCGGCTGAGGAAAAAGGCATACGTGCAACAGTTGGAGAGCAGTCGAGTTAGGCTTGCACAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGGTGTTCTTATTGCAAATGGACTCAATGCGGAACGAGGACATTCAGTTGTTGGAAATGGAGCATTAGCATTTGACATGGACTATGCTCGATGGGTGGATGAGCATCAAAGGCTGATCAATGATCTAAGATCAGCTATAAATTCTCGAATGGGTGATAATGAACTTTATGTTCTTGTTGATGGAGTCATGGCACATTACGATGAATTATTCAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACTCCTGCAGAAAGATGCTTCATATGGCTAGGTGGATTTCGTTCTTCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAACCATTAACGGAAGAGCAGTTGATGGGCATTTACAATCTGCAACAGTCTTCTCAGCAAGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGATACACTTTCAACGTCCTCACAGGGATCATCTGGTTCTGGAAATGTTGCCGAGTACATGGGTCAAATGGCAATTGCATTAGGCAAGCTTGCCACACTTGAGAGTTTCCTTCATCAGGCTGATCTCTTGAGGCAACAAACTCTGCAACAGATGAGACGAATTCTGACCACTTTCCAAGCTGCGCGGGCACTACTCGTCATAAATGATTACGTTTCACGACTCAGAGCTCTTAATTCTCTATGGTTAGCGTGCCCAAGAGAGTACTAG 1389 0.4622 MQSFNPTESESTSPLYSHSSFIHRGNDANPNPTRFSDLQHSFRQHDAVDLSSSSVFGAKSNNMAVVASNLQCGTFNTNLGGAEFGSTVVGCVETESQHMYQRGNSSATMPMGNQYVEKWADDSQHTEDTCTDIDTDDKNQCFSTVSWGNGVGDGALVVVDSQDQSKTKVKPEDQKTVRRLAQNREAARKSRLRKKAYVQQLESSRVRLAQLEQELQRARQQGVLIANGLNAERGHSVVGNGALAFDMDYARWVDEHQRLINDLRSAINSRMGDNELYVLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEEQLMGIYNLQQSSQQAEDALSQGMEALQQSLSDTLSTSSQGSSGSGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00013 462 Pfam bZIP transcription factor 175 214 IPR004827 GO:0003700|GO:0006355
Vium6428g00013 462 CDD bZIP_HBP1b-like 175 222 - -
Vium6428g00013 462 FunFam BZIP family transcription factor 174 223 - -
Vium6428g00013 462 Coils Coil 194 221 - -
Vium6428g00013 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Vium6428g00013 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Vium6428g00013 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Vium6428g00013 462 PANTHER TRANSCRIPTION FACTOR TGA9 99 461 - -
Vium6428g00013 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Vium6428g00013 462 MobiDBLite consensus disorder prediction 1 36 - -
Vium6428g00013 462 Gene3D - 174 224 - -
Vium6428g00013 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Vium6428g00013 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00013 Vium-Chr6428 123029 126574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00013 12 461 bZIP Transcription Factor Family AT1G68640 54.839 3.27e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6428g00013 DOG1 3e-29 No_clan