Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00008 ATGGCTGCGAAGGAGGATAATCGAATATTTGTGGGTGGTTTATCTTGGGACGTCACTGAGCGTCAACTCGAGCATGCCTTTTCTCGTTACGGCAAAATTATCGAATGCCAGATCATGATGGAAAGGGATACAGGCCGTCCACGTGGATTTGGGTTTATCACATTTGCAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCTGTCAACAAGGCGCAGCCTAAGATGGGGGGTGATGATATAGACCAAGGTTACAGAGGCAGCTACTCATCGGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGATAGGACAAGATGACTGCTTCAAATGTGGGCGTCCAGGACACTGGGCTCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTCGTGGTGGTGGGGGTTCATTTTCTTCCCATCCAAGGTTTGGAGGTGCTGGTGGACATGGGGATCGCCTTGGTGGTGAACGTGATCGATATGTGGATGACCGTTATGATGGAGGACGCTATGGAGACAGGGATCGTTTTGACAACCGTGACTACAAATATGGCAGCCGTGATCGCTATACTAGTGACAGGTACCCAAGCAGTGGAGATCGTTTTGCAAGCGATCGATATGGCAGTGGCTCGGATCATTACCCACAAAATGGTTATGGCAAGGAAAGAGGGTATGACCGATACAGTGGTCCACGAGGCGGCGCTGATAGGTATGGAAGTGGAATAGCTGGTCGAGATGAAGGAAGGAGTTATAGGGGTAGACCTGGTCCATATGACCGCCCAAGCAGGGGCTCTCGTCCATCACTCGATCGTTACTGA 846 0.5118 MAAKEDNRIFVGGLSWDVTERQLEHAFSRYGKIIECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDIDQGYRGSYSSGGRGSYGAGDRIGQDDCFKCGRPGHWARDCPLAGGGRGRGGGGSFSSHPRFGGAGGHGDRLGGERDRYVDDRYDGGRYGDRDRFDNRDYKYGSRDRYTSDRYPSSGDRFASDRYGSGSDHYPQNGYGKERGYDRYSGPRGGADRYGSGIAGRDEGRSYRGRPGPYDRPSRGSRPSLDRY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00008 281 MobiDBLite consensus disorder prediction 161 204 - -
Vium6428g00008 281 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 274 - -
Vium6428g00008 281 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Vium6428g00008 281 Gene3D - 116 142 - -
Vium6428g00008 281 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Vium6428g00008 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vium6428g00008 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vium6428g00008 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vium6428g00008 281 MobiDBLite consensus disorder prediction 139 281 - -
Vium6428g00008 281 Gene3D - 1 115 IPR012677 -
Vium6428g00008 281 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Vium6428g00008 281 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Vium6428g00008 281 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Vium6428g00008 281 SUPERFAMILY Retrovirus zinc finger-like domains 102 138 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00008 Vium-Chr6428 68551 73859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00008 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 7.21e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00008 - - gmx:100776333 464.922