Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00006 ATGGCGATAGGTGCAGCTTCCATGGGTGTGAATGGATGGGGAGACATGAAGAGTCTCACCGTCCAGGTCATCACCGGTCGATGGTTCGTCGTCTTTGCCTCCTTTCTAATCATGGCTGCTGCCGGAGCCACCTACATGTTCGGTCTCTACTCCGGAGACATCAAAACCACCCTTGGCTACGACCAAACCACTCTCAATCTCCTAAGTTTCTTCAAGGACATGGGCACTAACGTTGGAGTCCTCTCTGGTCTTATCAACGAGCTCACTCCACCTTGGGTGGTGCTAGCCATCGGTGCTCTGCTAAACTTTTTCGGTTACTTCATGATTTGGCTCTCAGTCACCCAGAAAATAGCCAGACCCCAAGTGTGGCAGATGTGTCTCTACATCTGCATAGGTGCTAACTCTCAGTCCTTCGCCAACACCGGTTCCCTCGTCACCTGTGTCAAGAACTTCCCTGAAAGTCGTGGTGTTGTGTTAGGCATTCTCAAAGGCTATGTGGGTCTCAGTGGAGCAATCATCACACAATTGTACTCTGCTATTTACTATGACGACACAAGGGCTTTGATTTTGCTCATAGGTTGGCTTCCAGCTGCTATTTCCTTTGCTTCCCTTCGAACCATTCGCTACATGAAGCCAGTTAGGCAGCCCAATGAGCTCAAGGTTTTCTACAACTTTCTGTATATCTCTCTTGGCCTTGCCGGGTTTCTTTTGGTCATGATTATTATACAGAAAAGGGTTGACTTTACTCAGAGTGAGTATGGTGTGAGCGCCGCTATTGTGATCTTCTTGCTCTTTCTCCCGCTTGCTGTTGTTTCCATGGAAGAATATAAGATCTGGCAGGGTAAAAGGCTTGCTTTGGTTGATCCTTCCCCGGTGAAAGTAGTAACCGAGAGTGAAAGGATTAAACCGAATGAGGCTACTGACGGTAGTAATTCAGTGTCAGCAGTTTCCAACGACACCAAGTGGTGGGAAAATGTGTTTAGTCCACCACCAAGAGGTGAGGACTATACGATACTTCAAGCACTATTCAGCATCGACATGTTCCTCCTGTTCATATGTAGCATCTGTGGTATTGGGGGCACGTTGACTGCAATAGATAATCTGGGTCAGATAGGAAAATCGCTTCGATACCCGAAGAAAAGCATAAGCACTTTCGTGTCCCTGGTAAGCATTTGGAATTACCTAGGACGTGTTTTCTCAGGATTTGTTTCTGAACATTTTCTACACAAGTACAAGTTCCCTCGTCCTCTCATGCTTACTTTAACTATGCTGCTGTCATGTGTTGGCCACCTTCTGATAGCATTTGATGTGCCAAATGGCCTTTATGCGGCTTCGGTAATCATAGGGTTTTGTTTTGGAGCTCAGTGGCCGTTACTTTTTGCCATTATATCAGAGCTTTTTGGACTAAAATATTATGCAACTTTGTACAATTTTGGAAGTGCAGCGAGTCCACTGGGTCTATATGTTCTTAATGTGGTGATGACTGGGCATTTGTACGACAAAGAAGCAAAGAAGCAACTGGCAGCGTTGGGGCTTGAAAGAAAGAAAGGGCAAGAATTGAATTGTATAGGGCTTCATTGCTTCAAGTTATCCTTCATCATTATCACAGCTGCAACTTTCTTCGGTGCCATTGTTTCACTGATTTTGGTGGCTAGGACAAGAAAGTTTTACAAAGGTGACATATACAAGAGATTCAGGGATGCAGCCACGGTGTCAGAAACTGAAATGGCGAGCGTGAAGAACGCAAACGGTGCAGAGAAAGATGAGAAACATGTGGTGCCAAATCATCGTCTTGATCAGAACAGCGACTAA 1812 0.4564 MAIGAASMGVNGWGDMKSLTVQVITGRWFVVFASFLIMAAAGATYMFGLYSGDIKTTLGYDQTTLNLLSFFKDMGTNVGVLSGLINELTPPWVVLAIGALLNFFGYFMIWLSVTQKIARPQVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYSAIYYDDTRALILLIGWLPAAISFASLRTIRYMKPVRQPNELKVFYNFLYISLGLAGFLLVMIIIQKRVDFTQSEYGVSAAIVIFLLFLPLAVVSMEEYKIWQGKRLALVDPSPVKVVTESERIKPNEATDGSNSVSAVSNDTKWWENVFSPPPRGEDYTILQALFSIDMFLLFICSICGIGGTLTAIDNLGQIGKSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLHKYKFPRPLMLTLTMLLSCVGHLLIAFDVPNGLYAASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSAASPLGLYVLNVVMTGHLYDKEAKKQLAALGLERKKGQELNCIGLHCFKLSFIIITAATFFGAIVSLILVARTRKFYKGDIYKRFRDAATVSETEMASVKNANGAEKDEKHVVPNHRLDQNSD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00006 603 CDD MFS_Mch1p_like 26 543 - -
Vium6428g00006 603 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 28 562 - -
Vium6428g00006 603 FunFam Nodulin family protein 338 559 - -
Vium6428g00006 603 Gene3D MFS general substrate transporter like domains 340 558 IPR036259 -
Vium6428g00006 603 Pfam Nodulin-like 27 271 IPR010658 -
Vium6428g00006 603 SUPERFAMILY MFS general substrate transporter 27 556 IPR036259 -
Vium6428g00006 603 MobiDBLite consensus disorder prediction 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00006 Vium-Chr6428 42715 44852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00006 5 567 Nodulin-like Gene Family AT2G39210 72.134 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00006 - - pvu:PHAVU_007G024800g 1098.19