Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00005 ATGGCAGTTGCAGTGGGAGATATGGTTAACACCAATGGCCTCCTCGTCCAAGTCATCACCGGACGGTGGTTCGTGGTCTTCGCCTCCTTCCTTATCATGGCCGCCGCCGGCGCCACCTACATGTTCAGTCTATACTCCGGCGACATCAAATCCGCCCTGGCCTACGACCAAACGACCCTCAACCTCCTCAGTTTCTTCAAAGACCTGGGGGGCAATGTCGGCGTGCTCTCCGGCCTCATAAACGAGATTACTCCCCCGTGGGTGGTCCTGGCCATGGGTTCCATACTCAACTTCTTCGGCTACTTCATGATATGGCTGGCGGTCACAAAAAGAATACCCAGACCGCAAGTGTGGCAGATGTGCCTCTACATCTGCATCGGTGCCAACTCTCAGTCCTTTGCCAACACCGGTTCACTCGTGACCTGCGTCAAGAACTTCCCCGAGAGCCGTGGTGTTGTGTTGGGCATCCTCAAAGGCTACGTGGGTCTGAGTGGAGCCATAATCACGCAGCTCTACTACGCCTTCTACTTCGACGACTCCAGGTCCTTGATTTTGCTCATAGCCTGGCTCCCAGCTGCTATCTCCTTCGCTTTCCTTCGTACCATTCGCTACATGAAACCCGTTCGACAACCCAACGAGCTCAGTGTCTTCTACAAGTTCTTGTACATCTCGCTGGCTCTCGCTGGCTTCCTCTTGCTCATGATCATAGTGCAGAAAAAATTCCCCTTCTCGCAAGGTGAGTATGGCGCAAGTGCCGGGGTTGTGCTTCTCCTGCTCTTCCTCCCACTTGCTGTTGTTTTTGTTGAACAACGTAAAATCAGGGAGACTCGGAAGCTAGCATTCATTGACCCATCCCCGGTGAAGATATCAGCTGAAAGAGAGCTACCGAAGTCGGCAAACGGTGACTCTAACCCGGTTTTGGGTCCGATTTCAAAGGCCGAAGAGACCAGATGGTGGCAAAAAGTCTTTAGTCCACCGGCTAGAGGTGAGGACTATACTATACTTCAAGCACTATTCAGCCTGGACATGATACTTCTATTCGTATCCGGCACGTGCGGTGTTGGGGGAACTTTGACCGCAATTGATAATCTTGGTCAGATTGGGAGCTCGCTAGGGTACTCCAAGGCTAGCATAAGCACGTTTGTGTCATTGGTTAGCATTTGGAATTATATGGGTCGGGTTTTTTCTGGGTTTGTCTCGGAACATTTTCTGCAACAGTACAAGTTCCCTCGACCACTGATGCTCACGCTGACCCTGCTCTTATCCTGCGTGGGTCACCTTCTGATAGCCTTCGACGTGCCGAACGGACTCTACATTTCATCAGTGATCATCGGGTTCTGCTTTGGCGCGCAATGGCCTCTGCTGTTCGCCATAATTTCCGAGCTCTTCGGGCTCAAGTACTATTCAACGTTGTACAACTTTGGCGGTGCAGCGAGCCCAATTGGGCTCTACATTCTGAACGTGAGGGTGACCGGGCACCTGTATGACAAGGAGGGTCTGAGGCAACTTGCAGCGGCGGGGAAACCAAGAATTAGTGGCCAGGAATTGACTTGTACAGGGGGCAGTTGTTTCAAGTTGTCTTTCATCATTATCACTGCAGCCACCGTTTTCGGTGCCATAATTTCACTCATCTTGGTTGCTAGGACTATTCCATTCTACAAAGGTGATATATACAAGAGGTACCGTGACCAAGCTGAGGAAAACACAACAACCGCCACGACCACCGAGATGAAGGTGGTCGAAAGCGGCGGTGAGAAAAGACAAGAAGCCGTGGTGGAGTAA 1782 0.5157 MAVAVGDMVNTNGLLVQVITGRWFVVFASFLIMAAAGATYMFSLYSGDIKSALAYDQTTLNLLSFFKDLGGNVGVLSGLINEITPPWVVLAMGSILNFFGYFMIWLAVTKRIPRPQVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYYAFYFDDSRSLILLIAWLPAAISFAFLRTIRYMKPVRQPNELSVFYKFLYISLALAGFLLLMIIVQKKFPFSQGEYGASAGVVLLLLFLPLAVVFVEQRKIRETRKLAFIDPSPVKISAERELPKSANGDSNPVLGPISKAEETRWWQKVFSPPARGEDYTILQALFSLDMILLFVSGTCGVGGTLTAIDNLGQIGSSLGYSKASISTFVSLVSIWNYMGRVFSGFVSEHFLQQYKFPRPLMLTLTLLLSCVGHLLIAFDVPNGLYISSVIIGFCFGAQWPLLFAIISELFGLKYYSTLYNFGGAASPIGLYILNVRVTGHLYDKEGLRQLAAAGKPRISGQELTCTGGSCFKLSFIIITAATVFGAIISLILVARTIPFYKGDIYKRYRDQAEENTTTATTTEMKVVESGGEKRQEAVVE 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00005 593 Pfam Major Facilitator Superfamily 366 546 IPR011701 GO:0022857|GO:0055085
Vium6428g00005 593 Gene3D MFS general substrate transporter like domains 337 551 IPR036259 -
Vium6428g00005 593 Pfam Nodulin-like 22 267 IPR010658 -
Vium6428g00005 593 SUPERFAMILY MFS general substrate transporter 22 550 IPR036259 -
Vium6428g00005 593 CDD MFS_Mch1p_like 21 539 - -
Vium6428g00005 593 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 23 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00005 Vium-Chr6428 34442 36569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00005 14 564 Nodulin-like Gene Family AT2G39210 68.231 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00005 - - gmx:100808975 973