Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6428g00001 ATGCTCCCAATCACCTGCATTCTTTTAATGTGCCTTTTAAGTTCTTTCTCACCTCCAATTGAAGCTCTCCTCAACCTCACCGTCTTACTTCACCAACACCCTCACCCAGAAGCCATAGTCCACGAACTTCAACGGAAGGTCAATGTCTCGTTGTGGAGAAGGCAAACACTGTCCAAGGACCAACAACCCGCGTGTCTCACCGGAAATCCAATCGACGACTGCTGGCGCTGCGACCCCAACTGGGCGGCCAACCGGCAGAAGCTGGCGGAGTGCGGCGTCGGGTTTGGCAAAGACGCCATGGGCGGAAAGGGCGGGCAGATCTACGTGGTCACGGATTCGTCGGACCGCGACCCAGCCAACCCTGTCCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAACCTCTCTGGATCGTGTTCGCTGCGGACATGACCATTAACCTGAAGCACGAGCTCATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGCGCTAACGTCCACGTCACGGGCCACGGCTGTATCACTCTCCAGTACGTCTCCAACGTCATCATTCACAACATCCACGTCCACCACTGCACACCCTCTGGGAACACGAACATACGCGCCAGTCCAACGCACGTGGGTTGGAGGGGTAGATCGGACGGCGACGGCATCTCCATCTTCGGCTCCCGAAAGATCTGGATCGACCACTGCTCACTCTCTTACTGCACGGACGGCCTGATCGACGCCATAATGGGTTCCACTGCAATTACTATTTCCAACAACCACTTCGCCCACCACGACGAGGTGATGCTCTTGGGACACAACGATAAGTACTCCCCCGACCGTGGCATGCAGGTCACCATCGCGTTCAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGTTGCAGGCTCGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGCAGATGTATGCCATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCGACGCGGATGCCAAAGAGGTGACGAAGCGCGTGGATACAGACGACAGAGAGTGGAGTGGGTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTTTTTGTACCATCGGGTGCAGGGCTCAGTGCACAGTATGCAGAGGCCACCAGTGTGCAACCCAAATCTGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGTGTATTCGGTGATCCCAGGGATAATGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGTCCGTGACCGGAGCGACCAGCAAGGGCAACAGTGCGGCGGGGTCCAGCAGTGACGATGGAGACTTCTTCGGAATGATATTCAGAGGAAGCAGCAGCCGTGCAGCGCCACCGTCATCACCGTCTTTGTCCGTTGCATTTGTTTCAACCTTTTTGTCTCTTGTAATTATTCTGATTTTGGACGCTTCGACCAACCATCCCATTCTATGA 1485 0.5603 MLPITCILLMCLLSSFSPPIEALLNLTVLLHQHPHPEAIVHELQRKVNVSLWRRQTLSKDQQPACLTGNPIDDCWRCDPNWAANRQKLAECGVGFGKDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDADAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGSVTGATSKGNSAAGSSSDDGDFFGMIFRGSSSRAAPPSSPSLSVAFVSTFLSLVIILILDASTNHPIL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6428g00001 494 Pfam Pectate lyase 151 332 IPR002022 -
Vium6428g00001 494 SMART amb_all 143 340 IPR002022 -
Vium6428g00001 494 Gene3D - 68 410 IPR012334 -
Vium6428g00001 494 SUPERFAMILY Pectin lyase-like 47 384 IPR011050 -
Vium6428g00001 494 PANTHER PECTATE LYASE 18-RELATED 32 409 IPR045032 GO:0030570
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Vium6428g00001 494 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Vium6428g00001 494 FunFam Pectate lyase 68 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6428g00001 Vium-Chr6428 9458 13598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6428g00001 1 494 Polysaccharide Lyase AT3G53190 61.446 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6428g00001 K01728 - gmx:100808438 875.544