Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6424g00008 ATGGCTCTGAAAAACGCTAAAGAGGAACAAGACCCGCGTTTGGAGAGAATCTCCTCTGCAATCCGAGTCATCCCTGATTTTCCCAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATCCCAAGGCTTTCAAAGACACCATCGATCTTTTTGTTGAGAGGTACAGAGATCAGAATATCAATGTTGTCGCAGGTGTTGAAGCAAGAGGTTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCCAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCAGGGGAGGTTATATCAGAAGAGTATTCTTTGGAGTATGGAAAAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGGGCCTTAGTCATAGATGATCTTATTGCCACTGGGGGAACGTTAGATGCTGCAATTAAGCTACTAGAACGTGTTGGGGTTCATATTGTGGAGTGTGCTTGTCTGATTGAATTACCAGAGCTGAAGGGGCGAGATAGGCTGGGAAACAAGCCGCTATTTGTCTTAGTGAAAGTGGCTGCATGA 561 0.4474 MALKNAKEEQDPRLERISSAIRVIPDFPKPGILFQDITTLLLDPKAFKDTIDLFVERYRDQNINVVAGVEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGKDKMEMHVGAVQPGERALVIDDLIATGGTLDAAIKLLERVGVHIVECACLIELPELKGRDRLGNKPLFVLVKVAA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6424g00008 186 SUPERFAMILY PRTase-like 19 180 IPR029057 -
Vium6424g00008 186 Hamap Adenine phosphoribosyltransferase [apt]. 17 184 IPR005764 GO:0003999|GO:0005737|GO:0006168
Vium6424g00008 186 Pfam Phosphoribosyl transferase domain 44 172 IPR000836 -
Vium6424g00008 186 CDD PRTases_typeI 51 183 IPR000836 -
Vium6424g00008 186 Gene3D - 4 185 IPR029057 -
Vium6424g00008 186 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 183 - -
Vium6424g00008 186 FunFam Adenine phosphoribosyltransferase 1 5 184 - -
Vium6424g00008 186 NCBIfam adenine phosphoribosyltransferase 18 183 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6424g00008 Vium-Chr6424 55465 64013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6424g00008 10 186 PRT Gene Family AT1G27450 81.356 9.94e-106 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6424g00008 K00759 - gmx:100777103 328.176